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Name : clpC (CD196_0027) Accession : YP_003213080.1 Strain : Clostridium difficile CD196 Genome accession: NC_013315 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 42995 - 45244 bp Length : 2250 bp Strand : + Note : - DNA sequence : ATGGAAGGTAAGGGAGAAGAAATCTCAGAAGATATAGTATTAAGTCCAAGGAGTAAACAAATACTTGAATTATCAGGAAT GTTTGCAAATAAATTAAAAACAAATTATATTGGGACTGAGCATATATTATTAGCAATTATTCAAGAAGGTGAAGGAATAG CTAATAAGATTTTAAATTATGCTGGAGTAAATGATAGGACTTTAGCCCAATTAACAATTGATATGATGGGTATTAGTGAT AAAAATCAATACAAAGCAGAGAATAGTTACACGGGCAACCAGAATCAAGCAGAATCTAAAGTACTTGATAAGTATGGAAG AAATCTTACACTATATGCAAAACAGAATAAAATAGACCCTGTAATAGGTAGAGAAAAAGAAATACAAAGAGTAATACAAA TATTAAGTAGAAGAACTAAAAACAATCCAGTGTTGATAGGAGACCCAGGTGTAGGGAAAACAGCCATAGCTGAAGGTCTG GCTACAAATATAGCCTTAGGAAATGTTCCAGAAACACTAAAAAACAAAACTTTATACTCTTTAGAGATGGGTTCATTATT GGCTGGGGCTAAGTATAGAGGAGAATTTGAAGAAAGAATTAAAGAAGTTGTAGATGAAGTTGTTAAAAATGGAAACATAA TCTTATTTATAGATGAGATGCACACAATAATAGGGGCTGGGTCTACTGGAGAAGGCTCTATAGATGCTTCAAATATATTA AAGCCAGCCTTGGCAAGAGGAGAAATACAAGTTATAGGTGCAACTACAATTGATGAATATAGAAAGCATGTTGAAAAAGA TTCTGCTCTAGAAAGAAGATTCCAACCAGTTATGGTAGATGAACCAACTAAAGAGGACTCAATAAAAATATTAGAAGGAT TAAGAGATAAATATGAAGCTCATCATAAAGTTAAAATAACTGATGATGCTATAAAGGCAGCTGTAGAATTATCAACTAGA TATATATCAGACAGATATCTGCCAGATAAAGCTATAGACTTGATTGATGAAGCTGCATCAAAAGTAAGATTAAAAGAAAA TACACCTCCTTCAGAAATAAAAAAATTAGAACTAGAAATAGAAAATATAGATAAAGAAAAAGAAGAAGCAGTAAGATGTC AAGACTTTGAGAAAGCAGCCAAAATAAGAGATGAACAAGGTCTACTTAAAAAACAATTAGAAGATGTTAGAGAAAGATGG AACAAGTCATCTAAACATTCAGATTTAGTTGATGGAGAAGTTATTGCTGAAGTAGTGGGCTTATGGACAGGAATACCAGT TAATAAAATTCTTGAAGAAGAGGCTGATAGACTTTTGAGACTTGAGGAAATACTGCACAATAGAGTTATAGGTCAAGAAC AAGCAGTAAAATCTATTTCAAAGGCAATCAGAAGGTCAAGAGCAGGTCTTAAAGACCCTAATAGACCAATTGGTTCATTT TTATTTTTAGGTCCAACAGGAGTAGGTAAAACAGAATTATCTAAGGCATTAGCAGAAGTGCAATTTGGAGATGAAAATCA AATAATTAGAATAGATATGTCTGAATATATGGAAAAACATGCTGTGTCAAGAATGATAGGTTCACCTCCAGGTTATGTAG GTCATGATGAAGGTGGTCAATTAACTGAAAAAGTAAGAAGAAATCCATATTCAGTTATCTTATTTGATGAGATAGAAAAA GCTCATCCAGATGTATTTAATATTCTGTTACAAATTCTAGATGATGGTAGACTAACTGATTCAAAAGGAAGAACTGTAGA TTTTAAGAATACTATTGTAATAATGACATCAAATGTTGGAGCATCTACAATTGGTAGACAAAAAACTTTAGGATTTAGTA TAGCTAAAGGAGACGAAGAAGAAAAATCTCAATATGAAAAAATGAAAGAAAATATAATGGGTGAATTAAAACAAAGATTC AGACCAGAGTTTTTAAACAGAATAGATGATATAATTGTTTTCCACTCACTAAATGAAAATCATATATCAAAAATAGTACT TTTAATGGCAGCGAAACTACAAGAGAGATTAAAAGAAATGGATATAAAATTAGAAATGAGTGATGAGGCTGTTAAATTAA TTTCTAAATCTGGATTTGACTTAGAATATGGAGCAAGACCTCTTAAAAGAGCTTTACAAAAAGAGTTGGAAGATGAGCTA TCTGAAGCAATCTTAAAAGGTAATGTGAAAAAGGGAAGTAATGTAGTAGCAAAAGTCAAAGATGAAAAAATAGTTTTTGA AACTAAATAA Protein sequence : MEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMMGISD KNQYKAENSYTGNQNQAESKVLDKYGRNLTLYAKQNKIDPVIGREKEIQRVIQILSRRTKNNPVLIGDPGVGKTAIAEGL ATNIALGNVPETLKNKTLYSLEMGSLLAGAKYRGEFEERIKEVVDEVVKNGNIILFIDEMHTIIGAGSTGEGSIDASNIL KPALARGEIQVIGATTIDEYRKHVEKDSALERRFQPVMVDEPTKEDSIKILEGLRDKYEAHHKVKITDDAIKAAVELSTR YISDRYLPDKAIDLIDEAASKVRLKENTPPSEIKKLELEIENIDKEKEEAVRCQDFEKAAKIRDEQGLLKKQLEDVRERW NKSSKHSDLVDGEVIAEVVGLWTGIPVNKILEEEADRLLRLEEILHNRVIGQEQAVKSISKAIRRSRAGLKDPNRPIGSF LFLGPTGVGKTELSKALAEVQFGDENQIIRIDMSEYMEKHAVSRMIGSPPGYVGHDEGGQLTEKVRRNPYSVILFDEIEK AHPDVFNILLQILDDGRLTDSKGRTVDFKNTIVIMTSNVGASTIGRQKTLGFSIAKGDEEEKSQYEKMKENIMGELKQRF RPEFLNRIDDIIVFHSLNENHISKIVLLMAAKLQERLKEMDIKLEMSDEAVKLISKSGFDLEYGARPLKRALQKELEDEL SEAILKGNVKKGSNVVAKVKDEKIVFETK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003213080.1 | ATP-dependent Clp protease | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_003213080.1 | ATP-dependent Clp protease | VFG0080 | Protein | 4e-151 | 49 |
