Gene Information

Name : CD196_0537 (CD196_0537)
Accession : YP_003213578.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : K : Transcription
COG ID : COG1475
EC number : -
Position : 639295 - 639831 bp
Length : 537 bp
Strand : +
Note : -

DNA sequence :
ATGGAATATAAAAGTCCTGTATATGGAATCATCGCAGTGCCAATCGAAAAGATAGAATCTAACGACTATAATCCAAATGC
AGTAGCCCCACCAGAAATGCAGTTGTTGTATAAAAGTATAAAAGAAGATGGGTATACAATGCCAATTGTCTGTTATTATA
ATGAGGAAAAGGATAAGTATATTATTGTAGATGGTTTTCATAGATATAGAGTAATGCTTGAAAATAAGGATATATATGAT
AGAGAAAACGGACTTCTTCCTGTTTCAGTAATTGATAAATCTCTTGATGAAAGAATGGCAAGTACTATTCGACACAATCG
TGCAAGAGGTTCTCATAATGTGGATTTAATGAGTAAAATTATAACTGAACTTTGTGAAATTGGAAAATCTGATGAATGGA
TATCAAAGCACCTGGGTATGGAAGTTGATGAAATTCTTAGATTGAAGCAAATAACTGGATTAGCTTATTTATTTAAAGAT
AAAGAGTTTGGTAATGCATGGATTCCCTTTGGCTCTGATATAGAAGAAGAAAATTAA

Protein sequence :
MEYKSPVYGIIAVPIEKIESNDYNPNAVAPPEMQLLYKSIKEDGYTMPIVCYYNEEKDKYIIVDGFHRYRVMLENKDIYD
RENGLLPVSVIDKSLDERMASTIRHNRARGSHNVDLMSKIITELCEIGKSDEWISKHLGMEVDEILRLKQITGLAYLFKD
KEFGNAWIPFGSDIEEEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 2e-59 74
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 3e-37 55
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 4e-37 55
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 8e-30 47
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 7e-30 47
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 8e-30 46
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 8e-30 46
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 2e-29 46
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 2e-29 46
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 6e-30 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_0537 YP_003213578.1 hypothetical protein VFG1505 Protein 2e-30 45