Gene Information

Name : CD196_0440 (CD196_0440)
Accession : YP_003213486.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 514474 - 515142 bp
Length : 669 bp
Strand : -
Note : -

DNA sequence : 
ATGATTATAAAAGCAAAACAATTATCAAAAATATATGGTTCTAATAACAATAAAGTTATAGCACTTAATAATGTAAATTT
AAAAATAAACTCAGGTGAATTTGTTTCTGTAATTGGACCTTCTGGAAGTGGAAAAAGCACACTTTTACATATTTTAAGTG
GATTAGATAATCCTACCTCTGGACAAGTGTTACTTGATGATAAAGATATATATAAACACACTGAAAAAGAACTATCTGCA
CTTAGAAGAAAATCCTTTGGATTCGTCTTTCAACAATTTAATCTTTTACCTGTTCTTACAGCATCTGAAAATATTTCAAT
GCCTGTACTTCTAGATAAAAAACAACCTGATAAAGACTATTTAAATGAAATTTCATCATTACTTGGAATTGCAGATAGAC
TCAATCATCTTCCCCATGAACTTTCAGGCGGTCAGCAACAAAGAGTTGCAATCGCTAGAGCACTTATTGCAAAACCAGAT
ATAATATTTGCTGATGAGCCTACAGGAAACTTGGACAGTAAAAGTGGCAGTGAAGTTATGAATCTTCTTATAAAAACTTC
AAAACAGTTTGGAAAGACTTTAGTGGTAATTACTCATGATGATAGAATTGCAAAACTTGCTGATAGAAAAATTTCAATTA
TTGATGGTGTTCTTATGGAGGTGAAATAG

Protein sequence : 
MIIKAKQLSKIYGSNNNKVIALNNVNLKINSGEFVSVIGPSGSGKSTLLHILSGLDNPTSGQVLLDDKDIYKHTEKELSA
LRRKSFGFVFQQFNLLPVLTASENISMPVLLDKKQPDKDYLNEISSLLGIADRLNHLPHELSGGQQQRVAIARALIAKPD
IIFADEPTGNLDSKSGSEVMNLLIKTSKQFGKTLVVITHDDRIAKLADRKISIIDGVLMEVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-35 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-35 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 45
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 9e-27 43
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_0440 YP_003213486.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 6e-52 55
CD196_0440 YP_003213486.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-51 50
CD196_0440 YP_003213486.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-40 47
CD196_0440 YP_003213486.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 7e-33 47
CD196_0440 YP_003213486.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 1e-31 41