Gene Information

Name : CD196_3439 (CD196_3439)
Accession : YP_003216452.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4054518 - 4055135 bp
Length : 618 bp
Strand : -
Note : -

DNA sequence : 
ATGATTTCATTAATAAATATATCTAAAAAATTTAAAGATAAATCTATAATAGACAAATTTAACCTAGAAATTTCTAAGGG
CGAGTTTGTAGCGATAACAGGAAATAGTGGTTCAGGTAAGACAACTTTACTTAATATAATGGGATTATTAGAAAAACCTA
ATTCTGGTGATATTATAATAAATAATATAAAAAATCCAAATAGTAAACAGATAAGAATTTTACAAAGGGATTTTTATGGC
TATCTATTTCAAAATTATGCTTTAATTGAGAATGAAAATGTTGAAAATAACTTGAAAATTGCTTTAAAGTATCAAAAAAA
TATCAACCATAATGAAAAAATAAATTACGCACTTGAGTCTGTAGGTCTTAGAAAATACAATAAAAAAAAGATATACGAAT
TGAGTGGAGGAGAACAACAAAGGGTAGCATTAGCAAGAGTAATATTAAAAGAATGTGAAGTAATATTTGCAGATGAACCT
ACAGGTAATTTAGATAAAAAAAATAGAGACATAGTATTTGATATACTTAAAAATCTAAATAAGAATGGTAAAACTATCGT
ATTTGTAACTCATGATTTAGAGTTATCGGAGCAGGCAGATAGAGTTATAAAATTGTAA

Protein sequence : 
MISLINISKKFKDKSIIDKFNLEISKGEFVAITGNSGSGKTTLLNIMGLLEKPNSGDIIINNIKNPNSKQIRILQRDFYG
YLFQNYALIENENVENNLKIALKYQKNINHNEKINYALESVGLRKYNKKKIYELSGGEQQRVALARVILKECEVIFADEP
TGNLDKKNRDIVFDILKNLNKNGKTIVFVTHDLELSEQADRVIKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 1e-33 53
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_3439 YP_003216452.1 ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 1e-31 48
CD196_3439 YP_003216452.1 ABC transporter ATP-binding protein CP003583.1.gene613.p Protein 4e-27 41
CD196_3439 YP_003216452.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_3439 YP_003216452.1 ABC transporter ATP-binding protein VFG0869 Protein 8e-25 41