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Name : int-Tn (CD196_3429) Accession : YP_003216443.1 Strain : Clostridium difficile CD196 Genome accession: NC_013315 Putative virulence/resistance : Unknown Product : integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 4043407 - 4044588 bp Length : 1182 bp Strand : + Note : - DNA sequence : ATGAAAAGACAAGACAGTAAAGGACGCAATTTGCGTCTTGGAGAGAGCCAGAGAAAAGACGGAAGATACGTTTATAAATA TACCGATATATTCGGGAAGCCACAGTTTGTATATTCTTGGAAGCTTGTACCCACAGACAAGACACCTGCTGGAAAACGTG ATGATATATCGTTGAGGGAAAAAGAAAAGCAGATAAAAAAAGACCTTGACGACGGTATCGACACGGTGGGCGGTAAAATG ACAGTCTGCCAGCTTTACGAAAAAAAGAACAATCAAAGAAAGAACATCAAGAGAAACACGGAATTAGGACGACAGTATCT TGTGAACGCACTGGAAAATGACCCATTGGGTATGAGGGCGATTGATACGGTCAAGCAGTCCGACGCTAAAGAATGGGCTA TCAGAATGAATGGCAAAGGTTATTCTTACAAGACGATAGATAACTATAAGCGTTCCCTAAAGGCTTCATTCTATATGGCG ATACAAGACGACTGTATCAGAAAAAATCCTTTTAATTCCAAGTTGAGTGATGTTCTGGAAGATGATACGGAAGCAAAGGT TATCCTGACACCAGAGCAGGAAGAAAAACTCCTTGCCTTTATGGAAACAGATAATGTTTACAGCAAGTATCGTGATGAAG TTATTCTTCTGCTGGAAACGGGACTTCGTATCTCTGAATTATGCGGACTGACAACACACATTGATATGCTTAACCGTGTG ATTAACATAGACCACCAGCTATTGCGTGATACAGAGGTGGGCTACTATATTTCCAAAGCTAAGACAAAAAACGGTAAGCG AGAGCTTCCATTAACAGAAAGAGCATATCAAGCACTCAAGCGAATTTTAAAGAACCGAGGAAAAGCACAACCGCTTGTTG TTGGTGGTTATAGCAATTTCTTATTCTTGAACCGTGAGGGATTGCCAAAGGTAGCAGGAAATTATGAAAGTATGGTGCGT GGGTTGATTAAGAAGTACAACAAGACCCATAAGGACAAGTTACCAAACATCACGCCCCATTCATTCAGACATACTTACTG TACGAACATGGCAAATAAGGGAATGAACCCAAACACCCTGCAATACATCATGGGACACGCAAACATAACCATGACATTAG GGTATTATGCTCACGGTACTTTCCAGTCTGCAAAGGCAGAGTTAGAAAGGCTGGCTTCTTAA Protein sequence : MKRQDSKGRNLRLGESQRKDGRYVYKYTDIFGKPQFVYSWKLVPTDKTPAGKRDDISLREKEKQIKKDLDDGIDTVGGKM TVCQLYEKKNNQRKNIKRNTELGRQYLVNALENDPLGMRAIDTVKQSDAKEWAIRMNGKGYSYKTIDNYKRSLKASFYMA IQDDCIRKNPFNSKLSDVLEDDTEAKVILTPEQEEKLLAFMETDNVYSKYRDEVILLLETGLRISELCGLTTHIDMLNRV INIDHQLLRDTEVGYYISKAKTKNGKRELPLTERAYQALKRILKNRGKAQPLVVGGYSNFLFLNREGLPKVAGNYESMVR GLIKKYNKTHKDKLPNITPHSFRHTYCTNMANKGMNPNTLQYIMGHANITMTLGYYAHGTFQSAKAELERLAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| int | YP_008394266.1 | integrase | Not tested | Not named | Protein | 2e-125 | 66 |
| SSU05_0917 | YP_001198283.1 | Tn916, transposase | Not tested | 89K | Protein | 1e-125 | 66 |
| SSU98_0923 | YP_001200481.1 | Tn916, transposase | Not tested | 89K | Protein | 1e-125 | 66 |
