Gene Information

Name : CD196_3420 (CD196_3420)
Accession : YP_003216434.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Unknown
Product : cell wall hydrolase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0791
EC number : -
Position : 4035091 - 4036098 bp
Length : 1008 bp
Strand : +
Note : -

DNA sequence :
ATGAAACTAAGACATATCGCTATTGTTGGCAGTCTGTTTTCTATCCTCTTTTCTCTCGTATTATTCTTTGGGGTTCTGAT
TAGTGCCGAGGACGACGACGGGGGCAATGGTTATTCCTCTAATTATGTAGGTATGAACCTATCTGCCGAAGTCTTGAAAC
ATCAGCCTATGGTAGAAAAGTATGCCAAAGAAAACGGTATTTCCGAGTATGTCAATGTGTTGCTGGTAATCATACAAGTG
GAAAGTGGCGGTACAGCCGAGGACGTTATGCAAAGCTCTGAAAGTCTGGGACTACCACCCAACTCACTAGATACGGAAAG
CTCAATCAAGCAGGGGTGTAAATATTTTGCGTCCCTGCTTTCTTCCTGCAAAAATCAAGGTATCAGTGATATAAATGTTG
TGATACAGTCCTATAACTATGGCGGTGGCTATGTTGGCTATGTGGCAGGAAACGGAAAAAAGCATATGTTCAACCTTGCG
GAAAACTTCGCAAGGGATAAGTCGGGCGGTCAAAAAGTAACCTATACGAACCCTATCGCCGTGGCAAAAAATGGTGGCTG
GCGTTATGGCTATGGAAATATGTTCTATGTGGAGCTTGTGAACCAGTACCTTGTTGTCAATCAAGTATCGGGCGAGCTGG
CACAAAAGGTTATGAATGAAGCCTTAAAATATCAAGGTTGGAAGTATGTATATGGTGGCAGTAACCCGAACACTTCTTTT
GATTGTTCGGGACTGGTACAGTGGTGCTACAACAAAGCTGGCGTATCTTTACCGAGAACCGCACAAAATCAGTATGACGC
AACCCAGCATATCCCACTATCGCAGGCAAAGGCAGGCGATTTGGTCTTTTTCCACAGTACCTACAATGCAGGAAGCTATG
TAACCCACGTCGGTATCTATGTAGGAAACACTCAGATGTATCATGCAGGCGACCCTATCGGATATGCCGATTTAAACAAT
GCTTATTGGCAACAGTACTTGATTTGTGCTGGAAGAATAAAACAGTAG

Protein sequence :
MKLRHIAIVGSLFSILFSLVLFFGVLISAEDDDGGNGYSSNYVGMNLSAEVLKHQPMVEKYAKENGISEYVNVLLVIIQV
ESGGTAEDVMQSSESLGLPPNSLDTESSIKQGCKYFASLLSSCKNQGISDINVVIQSYNYGGGYVGYVAGNGKKHMFNLA
ENFARDKSGGQKVTYTNPIAVAKNGGWRYGYGNMFYVELVNQYLVVNQVSGELAQKVMNEALKYQGWKYVYGGSNPNTSF
DCSGLVQWCYNKAGVSLPRTAQNQYDATQHIPLSQAKAGDLVFFHSTYNAGSYVTHVGIYVGNTQMYHAGDPIGYADLNN
AYWQQYLICAGRIKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
smi_1695 YP_003446797.1 hypothetical protein Not tested The aminoglycoside resistance gene cluster Protein 3e-118 89
SSU05_0924 YP_001198290.1 hypothetical protein Not tested 89K Protein 1e-97 69
SSU98_0930 YP_001200488.1 hypothetical protein Not tested 89K Protein 1e-97 69