|
Name : CD196_3419 (CD196_3419) Accession : YP_003216433.1 Strain : Clostridium difficile CD196 Genome accession: NC_013315 Putative virulence/resistance : Unknown Product : conjugative transposon protein Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0531 EC number : - Position : 4032959 - 4035094 bp Length : 2136 bp Strand : + Note : - DNA sequence : ATGAAAGAAAGGATAAAAAGTGTGTTCACAAGAAAAAAGATATTCCGCTTTCTCAAAATGGCTCTGTTTGTCGTGGCACT TTCCCTTATCCTGCTTTCACTTTTGGGAACGGTGGCACACGCAACGGGACTTGTGGACGACACTATCAACACCGAGAACC TTTATTCCAAATATCCGCTGTCGAATTATCAGCTTGATTTCTATGCAGATAATAACTGGGCGTGGTTGCCGTGGAACTGG CTGGACGGGATTGGAAAAAGTGTGCAATATGGGCTTTACTGTATTACCAACTTTGTCTGGACGATAAGACTATATCTAAG CAATGCAACGGGCTATGTAGTGCAGGAAGCCTACAAGCTGGACTTTATCAACGATATGGCAGACAGTATCGGAAGAAGCA TACAGACCCTTGCAGGCGTAACTCAAAATGGTTTTTCTACTTCGGGCTTTTATGTGGGATTTCTTCTGCTGATTATCTTA GTCGTAGGTATCTATGTTGCCTATACGGGACTGATAAAACGGGAAACCAGTAAGGCACTACACGCCGTTATCAACTTTGT TGTGGTGTTCGTATTATCGGCTTCTTTTATCGCCTATGCTCCTGACTACATCAAGAAAGTGAATGACTTTTCATCAGACA TCAGTACCGCTTCACTGGACTTGGGAACAAAAATCATGCTTCCCGACAGCGACAGCAAGGGCAAGGACAGCGTGGACTTG ATAAGGGATAGCCTATTTTCCATACAAGTACAACAGCCGTGGCTACTGCTTCAATTTGGTAATTCGGGTATAGAGGAAAT CGGGGCAGACCGTGTCGAAGCTCTCGTATCGGCAAGCCCAGAGGACGAGGACGGCAAGACCAGAGAGGAAGTCGTGAAAA CAGAAATCGAGGACAACGACAACAACAATCTGACGATACTGCAGGTGGTAAACCGTTTAGGTATGGTGTTCTTCCTCTTG TTCTTCAACTTGGGTATCACGATATTTGTATTCTTGCTTACGGGTATGATGTTGTTCAGCCAGATACTTTTTATCATTTT CGCTATGTTTCTGCCTATCAGCTTTCTATTAAGTATGATACCGAGCTATGAGAGCATGGCAAAACAAGCCATAGTCCGTG TGTTTAATACGATTATGACAAGGGCAGGTATTACACTGATTGTCACGGTAGCCTTTAGTATTTCCAGTATGTTCTACAAC ATATCGACGGACTACCCGTTCTTTATGGTGGCGTTCTTGCAGATAGTGTATTTTGCAGGTATCTACATGAAGCTGGGCGA TTTAATGAGCATGTTCTCTTTAAACGCTGGCGACAGTCAAAGCATGGGACGGCGAATATTCCGCAGACCGTATCTGTTCA TGCGACATAGGGCTAGACGTATGGAACATAGGCTTGCAAGAGCTGTTAGTGCTGGTGGTGTCGCTGGTGCGGTGGCTGGT GGTGTCGTTGCCAGTTCAAAATCTACACGCCAGAATGGAACAAAGAACAATCGTGGAAATACAAGCTCCAGCATGGGGCA GAAAGCAGGTTCAGCCGTGGGAGCTGTCCTTGATACAAAGAATAAGGTCAAGGACAAGGCAACTGCTGTCAAAGAAAATA TCAAAGATATGCCGACACAGACTGCCTATGCGGTTCACTCTGCTAAGGAAAAGGCGAAGTCCAGTGTGTCTGATTTCAAG CGTGGCGTGGTGCAGGAAAAGGAAAACCGCCAGTCTGGACGCTTAAAGAAGCAACAGCTACATAGACAGAATATCGCTGA CAAGCGTATGGAACTTCAAAAGGCACAAGAATCAAGGCAGGCAGGTAAGAAAACGGACGGATCAGCGACAAGCGGAGCTA CCCGTCCCCATGAAAGACCAGCTACCACTTCTAAGGTTAATGTAGAAAAACAGCAGGAAGTCAAACGCCCTGCCATAGCT TCAACCGTGAAGAATGATGAACCTATCAAGAAAAATGTTGTCAAGGAACGTCCACTATCTTCTGGCGATACATCAGCAAA GACCGTCAATCAAGAAACCACAAGACAGAATTACAAGACTGACCGTGTTACGAAAACAACCGTTCAGAAGCATACACAGC AGAATACCGAGAAGAACAAACGAACCGTATTCAAGAAAGGACAAAAGAAGAAATGA Protein sequence : MKERIKSVFTRKKIFRFLKMALFVVALSLILLSLLGTVAHATGLVDDTINTENLYSKYPLSNYQLDFYADNNWAWLPWNW LDGIGKSVQYGLYCITNFVWTIRLYLSNATGYVVQEAYKLDFINDMADSIGRSIQTLAGVTQNGFSTSGFYVGFLLLIIL VVGIYVAYTGLIKRETSKALHAVINFVVVFVLSASFIAYAPDYIKKVNDFSSDISTASLDLGTKIMLPDSDSKGKDSVDL IRDSLFSIQVQQPWLLLQFGNSGIEEIGADRVEALVSASPEDEDGKTREEVVKTEIEDNDNNNLTILQVVNRLGMVFFLL FFNLGITIFVFLLTGMMLFSQILFIIFAMFLPISFLLSMIPSYESMAKQAIVRVFNTIMTRAGITLIVTVAFSISSMFYN ISTDYPFFMVAFLQIVYFAGIYMKLGDLMSMFSLNAGDSQSMGRRIFRRPYLFMRHRARRMEHRLARAVSAGGVAGAVAG GVVASSKSTRQNGTKNNRGNTSSSMGQKAGSAVGAVLDTKNKVKDKATAVKENIKDMPTQTAYAVHSAKEKAKSSVSDFK RGVVQEKENRQSGRLKKQQLHRQNIADKRMELQKAQESRQAGKKTDGSATSGATRPHERPATTSKVNVEKQQEVKRPAIA STVKNDEPIKKNVVKERPLSSGDTSAKTVNQETTRQNYKTDRVTKTTVQKHTQQNTEKNKRTVFKKGQKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSU05_0925 | YP_001198291.1 | hypothetical protein | Not tested | 89K | Protein | 5e-176 | 58 |
| SSU98_0931 | YP_001200489.1 | hypothetical protein | Not tested | 89K | Protein | 5e-176 | 58 |
