Gene Information

Name : CD196_3377 (CD196_3377)
Accession : YP_003216391.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3983612 - 3984298 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGTTTTTAAAGATTGAAGATTTATGTAAGGTTTATGGTAAGAATGAAAATAAGGTTACTGCACTTGACCATGTCTC
ACTTACTATTGAAAAAGGGGAGTTTACTGCAATCATTGGTTCTTCTGGTTCTGGTAAATCTACACTACTACATTCCATTG
CAGGAGTAGACGTACCAACAAGTGGAAAGATATATCTGGAGGGGCAAGATGTATATGGCCAAAGCAATGAAAAACTTGCT
ATTTTTCGTAGGCGACAAGTTGGATTGATTTATCAGTTTCACAATCTGATACCCACATTAAATGTAGTGGAAAATATCAC
ATTGCCTATACTTATGGATAAGCGTAAGGTCAATCAAGAACGGTTAAATGACTTGTTAGAATTACTTGGTTTAAAAGAAC
GAAAAACACATTTACCAAATCAACTTTCTGGGGGCCAACAGCAACGTGTTGCCATTGGTCGTGCATTGATGAATGCACCA
GCAGTTATGCTTGCTGATGAGCCTACAGGTAGCTTAGACAGTAAAAATGGACAAGAGATTATCCAGTTACTGAAAGAGAG
CCATAGTAAATATCACCAAACTCTCATTATTGTCACACATGATGAAAACATTGCTTTACAGGCAGATAGAATTATCTGTA
TTTCAGATGGAAAAGTGGTGCGTGATGAGAGGAAGGTGAATCGTTAA

Protein sequence : 
MAFLKIEDLCKVYGKNENKVTALDHVSLTIEKGEFTAIIGSSGSGKSTLLHSIAGVDVPTSGKIYLEGQDVYGQSNEKLA
IFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNQERLNDLLELLGLKERKTHLPNQLSGGQQQRVAIGRALMNAP
AVMLADEPTGSLDSKNGQEIIQLLKESHSKYHQTLIIVTHDENIALQADRIICISDGKVVRDERKVNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-33 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-33 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-33 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-33 43
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 1e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_3377 YP_003216391.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-53 54
CD196_3377 YP_003216391.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-48 52
CD196_3377 YP_003216391.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 3e-30 43
CD196_3377 YP_003216391.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 9e-38 42