|
Name : CD196_3235 (CD196_3235) Accession : YP_003216249.1 Strain : Clostridium difficile CD196 Genome accession: NC_013315 Putative virulence/resistance : Virulence Product : transposon Tn21 resolvase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1961 EC number : - Position : 3838471 - 3839028 bp Length : 558 bp Strand : + Note : - DNA sequence : ATGGTAGTAGGTTATATGAGAGTTTCAACAGCAGAACAAAATGAAGATAGACAATTAGTTACAATGAAAAAGCATAATGT AGAAAAAATGTATCAGGAGAAAATAAGTGCCAAAGATACTAAAAGATCAAAACTAAACGCAATGTTAGATTTTGTAAGAG AAGGAGATACAATAATTGTACATGACTTTAGTAGACTTGCTAGAAGTACTAAAGACTTATTAGAAATAGTTGAGCTCTTA GAAAAGAAACATGTAAAGTTAATTAGTGATAAAGAAAATTTAGATACAAGTACACCTACAGGAAAACTTATGCTTACAAT GCTTGGCGCAATATATGAATTTGAGAGAACAAACATGTTAGAAAGACAACGAGAAGGTATCTCTATAGCTAAAGAACAGG GTAAATATAAAGGACGTAAAGAAGTTAAGATAGACAACTTTGGTAGTTATTATGATAGATATAAAACTAGAGAACTTAAT AAGACTCAATTGGCTAAAGAATTGGGAGTAAGTAGACCAACATTAGATAGATTAATAAAGAGCCATGAGAGTAACTAA Protein sequence : MVVGYMRVSTAEQNEDRQLVTMKKHNVEKMYQEKISAKDTKRSKLNAMLDFVREGDTIIVHDFSRLARSTKDLLEIVELL EKKHVKLISDKENLDTSTPTGKLMLTMLGAIYEFERTNMLERQREGISIAKEQGKYKGRKEVKIDNFGSYYDRYKTRELN KTQLAKELGVSRPTLDRLIKSHESN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpR | ACY75537.1 | TnpR | Not tested | Tn6060 | Protein | 3e-29 | 45 |
| tnpR | YP_006098373.1 | transposon Tn21 resolvase | Not tested | Tn2411 | Protein | 1e-28 | 44 |
| tnpR | AAL08439.1 | resolvase TnpR | Not tested | SRL | Protein | 9e-29 | 44 |
| tnpR | AFV53121.1 | Tn21 resolvase | Not tested | AbGRI2-1 | Protein | 9e-29 | 44 |
| res | YP_005124341.1 | DNA-invertase | Not tested | Not named | Protein | 2e-18 | 42 |
| tnpR | ACF06154.1 | resolvase | Not tested | Tn5036-like | Protein | 6e-27 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CD196_3235 | YP_003216249.1 | transposon Tn21 resolvase | VFG1030 | Protein | 4e-29 | 44 |
