Gene Information

Name : CD196_3235 (CD196_3235)
Accession : YP_003216249.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Virulence
Product : transposon Tn21 resolvase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1961
EC number : -
Position : 3838471 - 3839028 bp
Length : 558 bp
Strand : +
Note : -

DNA sequence :
ATGGTAGTAGGTTATATGAGAGTTTCAACAGCAGAACAAAATGAAGATAGACAATTAGTTACAATGAAAAAGCATAATGT
AGAAAAAATGTATCAGGAGAAAATAAGTGCCAAAGATACTAAAAGATCAAAACTAAACGCAATGTTAGATTTTGTAAGAG
AAGGAGATACAATAATTGTACATGACTTTAGTAGACTTGCTAGAAGTACTAAAGACTTATTAGAAATAGTTGAGCTCTTA
GAAAAGAAACATGTAAAGTTAATTAGTGATAAAGAAAATTTAGATACAAGTACACCTACAGGAAAACTTATGCTTACAAT
GCTTGGCGCAATATATGAATTTGAGAGAACAAACATGTTAGAAAGACAACGAGAAGGTATCTCTATAGCTAAAGAACAGG
GTAAATATAAAGGACGTAAAGAAGTTAAGATAGACAACTTTGGTAGTTATTATGATAGATATAAAACTAGAGAACTTAAT
AAGACTCAATTGGCTAAAGAATTGGGAGTAAGTAGACCAACATTAGATAGATTAATAAAGAGCCATGAGAGTAACTAA

Protein sequence :
MVVGYMRVSTAEQNEDRQLVTMKKHNVEKMYQEKISAKDTKRSKLNAMLDFVREGDTIIVHDFSRLARSTKDLLEIVELL
EKKHVKLISDKENLDTSTPTGKLMLTMLGAIYEFERTNMLERQREGISIAKEQGKYKGRKEVKIDNFGSYYDRYKTRELN
KTQLAKELGVSRPTLDRLIKSHESN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpR ACY75537.1 TnpR Not tested Tn6060 Protein 3e-29 45
tnpR YP_006098373.1 transposon Tn21 resolvase Not tested Tn2411 Protein 1e-28 44
tnpR AAL08439.1 resolvase TnpR Not tested SRL Protein 9e-29 44
tnpR AFV53121.1 Tn21 resolvase Not tested AbGRI2-1 Protein 9e-29 44
res YP_005124341.1 DNA-invertase Not tested Not named Protein 2e-18 42
tnpR ACF06154.1 resolvase Not tested Tn5036-like Protein 6e-27 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_3235 YP_003216249.1 transposon Tn21 resolvase VFG1030 Protein 4e-29 44