Gene Information

Name : CD196_2956 (CD196_2956)
Accession : YP_003215971.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 3502794 - 3502994 bp
Length : 201 bp
Strand : -
Note : -

DNA sequence :
ATGGGAATCAATTTAAAAATATTTAGGATTAAAAAAGGTTTAAAGCAACAAGAACTGGCAGATAGAGTTGGTATATCAAG
ATATTATTTGTCAAACTTGGAAACAGGTAAGGCTAATAATCCAAGCAATGATTTGATGATTAAACTATCTAGAGCTTTAG
ATACAACAGTAGAAGAATTATTTTTTAGTAAGGAGGAGTAA

Protein sequence :
MGINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELFFSKEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 0.064 42
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 0.043 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_2956 YP_003215971.1 phage transcriptional regulator VFG2168 Protein 0.018 42
CD196_2956 YP_003215971.1 phage transcriptional regulator VFG2175 Protein 0.018 42