Gene Information

Name : CD196_2374 (CD196_2374)
Accession : YP_003215394.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2756429 - 2757112 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATACTATATACTGAAAATTTATCAAAGCATTATGGAAAAGGAGAAAACTTAGTAAGAGCTTTGGACAATGTTAA
CTTAGAAATAAATGAAGGTGAATTTGTTGCAATAATAGGAAAATCAGGTTCTGGAAAAAGTACACTTTTACATATGATTG
GAGGTCTTGATATACCTACATCTGGGAAGGTGTATATAGATAATAAAAATATATTTACATTAAAAGAAGAAGAACTAGCT
GTGTTTAGAAGAAGAAAAATAGGGTTTATATTTCAAAGCTATAATTTAATTCCATCTCTTAATGTATGGGAAAATGTAGT
GTTGCCAATCGGTCTAGATGGTAGAGAAGTAGATGAATCTTTTATAAAAGAACTTTTGAAATCATTAGGACTTGAAAATA
AACATGACGTTTTACCAAATACATTATCAGGTGGTCAACAACAAAGGGTGGCAATAGCAAGAGCATTAGCTACAAGACCA
GCTATAATACTTGCTGATGAACCAACTGGAAACCTAGATTCTAAAACATCTGATGAGGTTATGAGTATATTAAAATCTAT
GTCTAAGAAGTACAGTCAAACTCTAGTTATGATAACTCATGATGACAGTATAGCCCAAATGGCTGATAGAGTTATATTCA
TAGAAGATGGCAGGGTGTCAAAGGTTGGTGATAAAAATGATTAA

Protein sequence : 
MKILYTENLSKHYGKGENLVRALDNVNLEINEGEFVAIIGKSGSGKSTLLHMIGGLDIPTSGKVYIDNKNIFTLKEEELA
VFRRRKIGFIFQSYNLIPSLNVWENVVLPIGLDGREVDESFIKELLKSLGLENKHDVLPNTLSGGQQQRVAIARALATRP
AIILADEPTGNLDSKTSDEVMSILKSMSKKYSQTLVMITHDDSIAQMADRVIFIEDGRVSKVGDKND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-38 49
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-40 47
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-40 47
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-40 47
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 4e-37 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 9e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_2374 YP_003215394.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 4e-68 66
CD196_2374 YP_003215394.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 5e-63 58
CD196_2374 YP_003215394.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-41 47
CD196_2374 YP_003215394.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 7e-36 45
CD196_2374 YP_003215394.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 2e-36 42