Gene Information

Name : CD196_1827 (CD196_1827)
Accession : YP_003214848.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2101049 - 2101747 bp
Length : 699 bp
Strand : -
Note : -

DNA sequence : 
ATGGAGGTTAATATGAAAATTACACATAATAGTTTAGCTGTAGAAGCAAAAAATATTATCAAAGAATATAAAATTGGAAA
TACAACAACTCGAGTGTTAAAAGAGGTATCTTTACAAGTAATGAAAGGTGAATTTGTTTCTATCATGGGTCAATCTGGTT
CTGGTAAAAGTACTCTTTTATATATTTTAGGTGGTTTAGATACTCCAACGAGTGGAAAAGTGTATATGAATGGAGCTGAT
ATATCACATTTTAATGATGAGAAAATGAGCATAATACGTCGTAGAAATATAGGATTCGTATTTCAATTTTATAACTTAAT
ACCAAATTTAAATGTGGAGGAAAATATAATGCTTCCTTTGTTATTAGATGGTAAAAATTTAAAAGATTATAAAAATCAAT
TAGATGAAATCTTAGATATAGTTGGTTTAACTGATAGACGTAAACATACACCACGAGAGTTATCTGGTGGTCAGCAACAA
CGTGTTGCTATAGCTCGAGCTTTAGTTGGAAAACCAGAGATTTTATTTGCTGATGAGCCTACTGGAAATTTAGATAGTAA
AACAGGGATAGAAATAATAGATTTACTGAATAAAATAAACAGAGACAATGGACAAACTATAATTATGGTAACTCACTCAC
CAGAAGCAGCCAAAAGTAGTAGTCGTACTATTACAGTTTCAGATGGTTTAATTGTATAA

Protein sequence : 
MEVNMKITHNSLAVEAKNIIKEYKIGNTTTRVLKEVSLQVMKGEFVSIMGQSGSGKSTLLYILGGLDTPTSGKVYMNGAD
ISHFNDEKMSIIRRRNIGFVFQFYNLIPNLNVEENIMLPLLLDGKNLKDYKNQLDEILDIVGLTDRRKHTPRELSGGQQQ
RVAIARALVGKPEILFADEPTGNLDSKTGIEIIDLLNKINRDNGQTIIMVTHSPEAAKSSSRTITVSDGLIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-40 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-41 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-41 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-41 45
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_1827 YP_003214848.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-54 53
CD196_1827 YP_003214848.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-46 51
CD196_1827 YP_003214848.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-48 51
CD196_1827 YP_003214848.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-39 44
CD196_1827 YP_003214848.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 5e-41 41