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Name : serS1 (CD196_0014) Accession : YP_003213068.1 Strain : Clostridium difficile CD196 Genome accession: NC_013315 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 17811 - 19082 bp Length : 1272 bp Strand : + Note : - DNA sequence : ATGTTAGATATTAAAAGAATAAGAGAAAATCTAGATGATATCAAAAAAGCTATGGAAAGAAGAGGTGAAAGAGAATTTGA CCTTGATGCTGTAGTGGAACTAGATAATAAAAGAAGAGAAATACTTCAAGAAGTTGAAGTTATGAAAAATGAGTTAAATG TAAATTCTAAAAAAATACCTCAATTAATAAAAGAAGGAAAAGATGTAACAGAAGAAAAGACAAGATTGAAAGAGTTATCA GATAAGATAAAAGGTATTGATGAGAAAGTAAAAGAAGTAGAAGCAAAAATGGAATATACATTAATGAGAATACCAAATGT TCCTCATCCAGAGGTACCACAAGGTGAAACAGATGAAGACAATGTTCAAATAAGAACTTGGGGAGAACCTACTAAATTTG ATTTTGAGTATAAAGCGCATTGGGATATAGGGACAGGTCTAGGTATTTTAGATTTTGAAAGAGCAGGGAAAATAACTGGG TCAAGGTTTACTTTATATAGGGGATTAGGAGCTAGATTAGAAAGATCTTTAATGAATTTCTTTTTAAATACTCATACAGC TAAGCATGGCTATACAGAAGTCTTACCTCCATTTATGGCCAATAGAAATAGTTTTATAGGGACTGGTCAACTTCCTAAAT TTGAAGAAGATATGTTTAAAATAGAAGGATTAGAGTATTTCTTAATACCAACAGCTGAAGTTCCTGTTACTAATATACAT GCTAATGAAATATTAGATGTTGCAGAGCTTCCAATTAAATACTGTGCATATACTCCTTGTTTTAGATCTGAAGCAGGTTC AGCAGGAAGAGATACAAGAGGTTTAGTTAGACAACATCAATTTAATAAAGTTGAATTAGTTAAATTTGTTAAACCAGAAG ATTCTTATAATGAATTAGAATCATTAACTCATGATGCTGAAACTATGTTACAAATGTTAGGTCTTCCATATAGAGTTGTA AAAATATGTACAGGAGATTTGGGATTTACAGCTGCATTTAAATATGATTTAGAAGTTTGGATGCCAAGTTACAATAGATA TGTAGAAATATCTTCTTGTTCAAATTTTGAAGATTTCCAAGCAAGAAGAGCAGGAATAAGATTTAAAAGAGATAAAAAAT CAAAAGCAGAATATGTTCATACATTAAATGGTTCTGGATTAGCGATAGGAAGATGTTTGGCTGCTATATTAGAAAATTAT CAGCAGGCAGATGGTTCTGTAGTAGTTCCAGAAGAATTAAGACCTTATATGGGTGTTGATGTTATAAAATAA Protein sequence : MLDIKRIRENLDDIKKAMERRGEREFDLDAVVELDNKRREILQEVEVMKNELNVNSKKIPQLIKEGKDVTEEKTRLKELS DKIKGIDEKVKEVEAKMEYTLMRIPNVPHPEVPQGETDEDNVQIRTWGEPTKFDFEYKAHWDIGTGLGILDFERAGKITG SRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQLPKFEEDMFKIEGLEYFLIPTAEVPVTNIH ANEILDVAELPIKYCAYTPCFRSEAGSAGRDTRGLVRQHQFNKVELVKFVKPEDSYNELESLTHDAETMLQMLGLPYRVV KICTGDLGFTAAFKYDLEVWMPSYNRYVEISSCSNFEDFQARRAGIRFKRDKKSKAEYVHTLNGSGLAIGRCLAAILENY QQADGSVVVPEELRPYMGVDVIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-114 | 57 |
