Gene Information

Name : CD196_1400 (CD196_1400)
Accession : YP_003214428.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1630425 - 1631099 bp
Length : 675 bp
Strand : -
Note : -

DNA sequence : 
ATGTTAATTAAATTAGAAAATATTCAAAAATATTACAAAGTAGGGAAAGATGAATTACATGTTTTAAAATCCTTAAATTT
AGAAATTGAATCTGGAGAATTTGTCATGATAATGGGTAAGTCTGGTAGTGGTAAAACTACTTTACTTAATATCTTAGGTT
TTCTAGATGTATTTGATGAAGGAAGATATATATTTGATGGAACAGATGTAACTAATTTGAGTGAAAATGAACGTTCTGTT
TTTAGAAATATTAATATTGGATTTGTTTTCCAACAATTTAATTTAATAGAAACTCTAAATGTATATCAAAATGTAGAGTT
GCCTCTAATTTACAATAAAGCACTAAAAAAATCTAATAGAGAAGAAATTGTTAAAGATAAATTAAGTTCTGTTGGGCTTT
TGGACAAGCTTAAGCAGAAACCACTTCAATTATCTGGTGGTCAACAACAGCGTGTAGCCATTGCACGTTGCCTAGTAAAT
GACCCTCAGATAATCTTTGCTGATGAACCGACTGGGGCATTAGATAGTGAAACTAGCAGAGAAATTATGGAGCTTTTAAC
AAGGCTCAACAAACAAGGTAAGACTATAATAATGGTTACACATGATCAAGATTTAACTAAGTATGCAACTAAGGTTATAC
GACTTAAAGATGGTGTGTTTACTTCGGAGGTGTAA

Protein sequence : 
MLIKLENIQKYYKVGKDELHVLKSLNLEIESGEFVMIMGKSGSGKTTLLNILGFLDVFDEGRYIFDGTDVTNLSENERSV
FRNINIGFVFQQFNLIETLNVYQNVELPLIYNKALKKSNREEIVKDKLSSVGLLDKLKQKPLQLSGGQQQRVAIARCLVN
DPQIIFADEPTGALDSETSREIMELLTRLNKQGKTIIMVTHDQDLTKYATKVIRLKDGVFTSEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-33 45
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-30 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_1400 YP_003214428.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-50 54
CD196_1400 YP_003214428.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-35 44
CD196_1400 YP_003214428.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 8e-38 44
CD196_1400 YP_003214428.1 ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 9e-27 43
CD196_1400 YP_003214428.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 2e-31 43
CD196_1400 YP_003214428.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-33 42