Gene Information

Name : CD196_1338 (CD196_1338)
Accession : YP_003214367.1
Strain : Clostridium difficile CD196
Genome accession: NC_013315
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1555713 - 1556390 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAATTTTAAGAGTAGAAAATCTAACTAAAAGTTATGGTAAAAATGAAACAAAAGTTGATGCTATAAAAAATGTAAG
TTTATCAGTTGAAAAAGGAACGTTTATAGCAATAACAGGTCCAAGTGGAAGTGGTAAAAGTACCTTATTACATTTATTAG
GAGGAGTTGACAGACCAACTAGTGGTAAGGTTTATATAAATGATGTTGATATATATAATTTAAAAACTAAGGATTTGGCG
ATATTTAGAAGAAGAAATATAGGTCTTATATATCAATTTTACAACTTAATTCCAGTCTTAAATGTGAAGGAAAACATATT
GCTTCCAGCAGAGCTTGACAATAGAGATATTGATAGAGAATATTTTGATGATTTAATGAAAACATTAGGTCTAATTGATA
GAGAAAAGCACCTTCCAAACCAATTATCAGGAGGTCAACAACAGAGAACCTCTATAGGACGTGCATTAATTAATAGACCT
TCTATAATATTAGCAGATGAGCCAACAGGTAATTTAGATAGTAAAAATTCAAAGGAAATATTAGAATTGTTAAAATTGTC
AGTAAAAAAATACAATCAGACACTAATAATGATAACTCATGACAAAAATATGGCACTTCAAGCTGATAGAATTATAAGCA
TAGAAGATGGAATCATAAAAAGTGATGAGGTGATGTAG

Protein sequence : 
MEILRVENLTKSYGKNETKVDAIKNVSLSVEKGTFIAITGPSGSGKSTLLHLLGGVDRPTSGKVYINDVDIYNLKTKDLA
IFRRRNIGLIYQFYNLIPVLNVKENILLPAELDNRDIDREYFDDLMKTLGLIDREKHLPNQLSGGQQQRTSIGRALINRP
SIILADEPTGNLDSKNSKEILELLKLSVKKYNQTLIMITHDKNMALQADRIISIEDGIIKSDEVM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 1e-35 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-36 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-38 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-38 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-38 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CD196_1338 YP_003214367.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-62 56
CD196_1338 YP_003214367.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-58 55
CD196_1338 YP_003214367.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-38 43
CD196_1338 YP_003214367.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 5e-33 41