Gene Information

Name : kpsC (CTU_06130)
Accession : YP_003208976.1
Strain : Cronobacter turicensis z3032
Genome accession: NC_013282
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export protein kpsC
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 660693 - 662711 bp
Length : 2019 bp
Strand : -
Note : -

DNA sequence : 
ATGGTAACCGGTATTTTCTCGAAGGGCATCTGGCGCATTCCCGGCTTAGCGCATCTGCTGCCAATGCCTTGCCGGAAACT
CACGCCGCGCCGGGCTATCCCGGACGATATTACGGCTATCGCCGTCTGGGGTCATCGCCCCAGCGCGGCGGCGGCCGAGG
CTCGCGCCCGTCAGGCCGGGCGTGCGGTTATCCGTCTGGAAGATGGCTTTATCCGTTCTGCCGGTCCGGCGGTACATGGT
CATCCGCCGCTTTCACTGGTTATCGATTACGATGGCATCTACTACGACGCCAGTAAGCAAAGCACGCTGGAGAAACTGAT
TCAGGATCGGCCCGGCAACGACGCGCACTGTGAGGCGGCGCAGGAGGCGATGCGGCTTATCGTGCAGGGTGATCTGGCGA
AGTATAACCACGCGCCGCCCTTTGACGGCGCGCCAGAGACCCGCGCGGTGCTGGTGGTGGATCAGACCGCAGGCGATATG
TCGGTCACGCTCGGCAATGCCAGCGCAGCCTCGTTCCGCCTGATGCTGGAGGTTGCCTGCGCCGAAAACCCTGGCGCCGA
AATATGGGTAAAAACACATCCTGACGTCGTGAGCGGCCATAAGCGCGGCTATCTGCGCGACATGTGCGCGGATGGCCGCG
TCCGACAGATAGCCCAGGATGCCAGCCCGCAGTCGCTGCTGCGGTGCGTGGAGCGCGTCTACACCGTGACGTCGCACTAC
GGCTTTGAAGCGCTGATGGCGGGCAAACCGGTGGTCTGCTTCGGCCAGCCCTGGTATGCCGGATGGGGGCTGACGGACGA
CAGGCACCCGGCCGCGGCAACGCTTGCCGCACGGCGCGGCAAGGCCACGTTACTCACACTTTTCAGCGCCGCCTATTTAC
GCTACGCACGCTACCTCAATCCGCAAACCGGCGAGCCCGGCACGCTGTTTGATGTGCTGTCGTGGCTGACGTTGCAGCGC
CGTCATCAACTGGCGCTGCGCGGTACGCTCTGGACGCCAGGGCTGACGCTCTGGAAACGCAGTATCGTGAAACCGTTTCT
CGCCACGCCCTATAACCGGCTGCGCTTTATGCGCCGCGTGCCGCAGGCCGACGCCTGCGTGGTCTGGGGAACGGCAGGTG
AAGCCCGCTGGCAGGTGGCGGCGCAGGCGCATGGTCTGCCCGTATGGCGAATGGAGGATGCGTTTCTGCGTTCGGCGGGT
CTCGGCTCCGATCTCTTTGCCCCGCTTTCACTGGTGCTGGATAAACGCGGCCTCTATTACGACGCCACGCGCGCAAGCGA
TCTGGAAGTCGCCCTTAGCGAGGCGCATCTGACGCCCGCGCAGGAGATGCGCGCCGAACGCCTGCGTCAGCAAATAATCG
AAAACGGCGTCAGTAAATACAATGCCGGCGGCGCATGGCGGCTGCCGTCATCGGCATGGGGCCGCCGCGTTCTGCTGGTG
CCGGGCCAGGTGAGCGATGACGCTTCGCTGGCCGGCGGTACGAAGGATATCCGCACGCTCACGGCCTTGCTGCGTCTCGT
TCGCGCCCGAAACCCGCGGGCGTATATCGTTTTCAAAGCGCACCCGGATGTGGCCGCCGGTAACCGATCGGGCGAGCCCA
GTGAACAAGACGCGCTGCGCTGGGCCGATTGCCTCGCGACACAGGCGGATATCGCCGGAGTGCTCGAACAGGTCGACGAG
GTGCATACGCTCACCTCGCTGACCGGCTTTGAGGCGCTGCTGCGAGGTAAAACAGTTTACTGCTACGGCATGCCGTTCTA
TGCCGGATGGGGACTGACGCACGATGAATATACCTGTCCGCGCCGCACCCGGCGGCTCACGCTTAACGCGCTTATCCACG
CGACGCTTATCGATTATCCCTTCTACCTGCACCCGACGCGTAAAACGCCGATGAGCGCCGAAGAGGCCGTCGCACGCCTC
AGCGTGTCGCCTGCGCGACGCCGCGCGCTACAGCGCCGCCGGAAAACGCTTATGCGTCTGGCCAATAAAGCCCGCAATCT
CTTTCACGCTCTTTTTTAA

Protein sequence : 
MVTGIFSKGIWRIPGLAHLLPMPCRKLTPRRAIPDDITAIAVWGHRPSAAAAEARARQAGRAVIRLEDGFIRSAGPAVHG
HPPLSLVIDYDGIYYDASKQSTLEKLIQDRPGNDAHCEAAQEAMRLIVQGDLAKYNHAPPFDGAPETRAVLVVDQTAGDM
SVTLGNASAASFRLMLEVACAENPGAEIWVKTHPDVVSGHKRGYLRDMCADGRVRQIAQDASPQSLLRCVERVYTVTSHY
GFEALMAGKPVVCFGQPWYAGWGLTDDRHPAAATLAARRGKATLLTLFSAAYLRYARYLNPQTGEPGTLFDVLSWLTLQR
RHQLALRGTLWTPGLTLWKRSIVKPFLATPYNRLRFMRRVPQADACVVWGTAGEARWQVAAQAHGLPVWRMEDAFLRSAG
LGSDLFAPLSLVLDKRGLYYDATRASDLEVALSEAHLTPAQEMRAERLRQQIIENGVSKYNAGGAWRLPSSAWGRRVLLV
PGQVSDDASLAGGTKDIRTLTALLRLVRARNPRAYIVFKAHPDVAAGNRSGEPSEQDALRWADCLATQADIAGVLEQVDE
VHTLTSLTGFEALLRGKTVYCYGMPFYAGWGLTHDEYTCPRRTRRLTLNALIHATLIDYPFYLHPTRKTPMSAEEAVARL
SVSPARRRALQRRRKTLMRLANKARNLFHALF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 2e-177 62
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 1e-177 62
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 3e-124 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsC YP_003208976.1 capsule polysaccharide export protein kpsC VFG0259 Protein 1e-124 47
kpsC YP_003208976.1 capsule polysaccharide export protein kpsC VFG0704 Protein 3e-104 45
kpsC YP_003208976.1 capsule polysaccharide export protein kpsC VFG0692 Protein 2e-114 44
kpsC YP_003208976.1 capsule polysaccharide export protein kpsC VFG2568 Protein 4e-70 41