Gene Information

Name : pmrA (CTU_03980)
Accession : YP_003208761.1
Strain : Cronobacter turicensis z3032
Genome accession: NC_013282
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator BasR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 443708 - 444370 bp
Length : 663 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTGCTGATAGTCGAAGATGATCTGCTGTTACAGGAAGGACTGGCGCTCGCGCTCGGCAACGAGGGCTATGCGCT
GGATTGTGCCGCGAATGCCACCGAAGGCGACGCCCTGCTCCAGAGCGGCGAGTACAGCCTGATTATTCTCGATTTAGGCC
TGCCGGACAAAGACGGCGCCACGCTGCTTAGCCAGTGGCGCCGAAGCGGCGTCACAACCCCGGTGCTTATCCTCACGGCG
CGCGACGCGCTGGAAGATCGCGTCAGCGGGCTTGATGCGGGCGCGGATGACTATCTGGTCAAGCCCTTTGCGCTGGCGGA
ACTTCACGCCCGGGCGCGGGCGCTGATTCGCCGTTATCAGGGCCATAGCGACAATCTGCTACAGCACGACGACATTACGC
TCAACCTGCAAACGCAGCAGGTATTGCTCCAGGGACTGCCCGTAGAAGTGACGCCGAAAGAGTTCGCGTTACTCACCCGC
CTGATGATGCGTATCGGCCAGACGGTGCATCGTGAAACCCTGCAACAGGATATCTACAGCTGGCAGGACGATCCCAGCTC
CAATACGCTGGAAGTGCATATCCATAACCTGCGCCGTAAGCTTGGCAAAACCCGCATCCGCACCATACGTGGCGTGGGCT
ACCGGCTGGAGCGCCTTTCATGA

Protein sequence : 
MKLLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGLPDKDGATLLSQWRRSGVTTPVLILTA
RDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQGHSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTR
LMMRIGQTVHRETLQQDIYSWQDDPSSNTLEVHIHNLRRKLGKTRIRTIRGVGYRLERLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 8e-24 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-17 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-17 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_003208761.1 DNA-binding transcriptional regulator BasR BAC0487 Protein 4e-47 69
pmrA YP_003208761.1 DNA-binding transcriptional regulator BasR BAC0197 Protein 8e-19 44
pmrA YP_003208761.1 DNA-binding transcriptional regulator BasR BAC0083 Protein 9e-17 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_003208761.1 DNA-binding transcriptional regulator BasR VFG0473 Protein 3e-39 57
pmrA YP_003208761.1 DNA-binding transcriptional regulator BasR VFG0596 Protein 5e-18 42