Gene Information

Name : soxS (CTU_37460)
Accession : YP_003212109.1
Strain : Cronobacter turicensis z3032
Genome accession: NC_013282
Putative virulence/resistance : Resistance
Product : DNA-binding transcriptional regulator SoxS
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 3898827 - 3899150 bp
Length : 324 bp
Strand : +
Note : -

DNA sequence : 
ATGTCACATCAGGAAATTATCCACGCACTGACGCAATGGATTGATGAGCATATTGACCAGCCACTGAATATTGATGTGGT
GGCAAAGAAGTCGGGCTATTCGAAATGGTATTTACAGCGGATGTTCCGTACCGTCATGCATCAGACGCTGGGTGAGTATA
TTCGCAAGCGTCGCCTGCAACTGGCGGCGCAGGAGTTACGCACGACCCGACGGCCGATTTTTGATATTGCAATGGATTAT
GGCTATGTGTCGCAGCAGACGTTCTCGCGAATTTTCCGCCGTCAGTTCGACCGCACGCCGAGTGATTATCGTCAGAGCGC
CTGA

Protein sequence : 
MSHQEIIHALTQWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVMHQTLGEYIRKRRLQLAAQELRTTRRPIFDIAMDY
GYVSQQTFSRIFRRQFDRTPSDYRQSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-40 87
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-21 49
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-21 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS NC_002695.1.914293.p Protein 2e-40 87
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene4488. Protein 5e-41 87
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS BAC0371 Protein 2e-40 87
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP001918.1.gene327.p Protein 3e-42 87
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP000034.1.gene4505. Protein 4e-40 86
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP000647.1.gene4499. Protein 5e-42 84
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS NC_010558.1.6276025. Protein 7e-22 49
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene612.p Protein 2e-25 48
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP000647.1.gene1624. Protein 5e-21 45
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP001918.1.gene2033. Protein 3e-21 44
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene1637. Protein 6e-21 44
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS NC_002695.1.917339.p Protein 5e-21 43
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS BAC0560 Protein 5e-21 43
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS CP000034.1.gene1596. Protein 4e-21 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS VFG0585 Protein 5e-41 87
soxS YP_003212109.1 DNA-binding transcriptional regulator SoxS VFG1038 Protein 6e-22 49