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Name : yfcU (CTU_36430) Accession : YP_003212006.1 Strain : Cronobacter turicensis z3032 Genome accession: NC_013282 Putative virulence/resistance : Virulence Product : outer membrane usher protein yfcU Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3791958 - 3794465 bp Length : 2508 bp Strand : - Note : - DNA sequence : ATGGCCAGAATACATAATCAACAAGCCACTATAACGAAACTGATAGTGCCGTCAGCATTGGCTTTATGCATCTGCGCGTG TTTACGGACTCCCGCAATGGCGGCAGATGATATCCAGTTTAATACCGATGTATTAGACGTGAAAGACAAAAAGAATATCG ATCTGAGTCAGTTTTCAAAGCGCGGCTATATTATGCCGGGCAATTACGATTTCAAAATAAAAGTTAATCAAAACGAACTG GAAGAACAACCGGTCAGCGTGTTTGCCGCTGAGAATGATAAAACCCAGTCGATTGTCTGCTTTACGCAGGACCAGATTCA AAAATTTGGTTTTAAAGAGAAATATCTGCCGCAGTTTAAAAGCTGGCATAACGGCCAATGTGTGGATATCACGGCGCTGC AAGGCGTGGAGGTCACGCCGGATCTCGGCAACAGTACGCTGATGATAAGCGTACCCCAGGCGTATCTGGAATATACCTCT GATGACTGGGTGCCGCCGTCGATGTGGGATGACGGTATCGCTGGCCTGCTTGCTGATTACAACGTTAACGCCCAGACGCG TCATAACGAAGGCGGTCAGGGCGGCGATGAAAACACGGTTTCCGGTAACGGTACTGTCGGCGCCAACATGGGGCCGTGGC GTCTGCGTGCCGACTGGCAGGCAAATTATGACGATCGCTCAGATACCAGTGGTCAGAAAAAGTGGACATGGAGCCGCTTT CAGATGTACCGCGCGTTGCCGAAGATGGGTGCGAAGCTGACGGTCGGCGAAGACTACATGAACTCCGATCTGTTCGACAG CGTGCGCTTCGCAGGCGCCAGTGTGGTGTCGGACGACAATATGCTGCCGCCCAACCTGCGGGGTTACGCACCGGAAGTGA CCGGCGTGGCGAAAACCAACGCCAAGGTGACCATTTCGCAGCAGGGCCGCGTGATTTATGAAACCCAGGTCGCCGCAGGC CCGTTTGCGATTCAGGACCTGAATAACTCCGTCTCCGGCGCGCTGGATGTGCGCGTGCAGGAGCAGGACGGTTCGGTGCA GCAATATAAAGTGAATACGGCCTCGATCCCGTACCTGACGCGTCCTGGCAGCGTGCGTTACAAGATGTATGCCGGTCGGC CAAGCACCTACGATCACCATAGCGAAGGCAGTGGTTTCGGCTCAGGCGAATTTTCCTGGGGGGTCAGCAACGGCTGGTCG CTCTACGGTGGCCTGGTGGCAAGCCGCAACTATCTGGCCACAGCGCTGGGTGTAGGGCGCGATCTTATGGCGCTGGGGGC GCTGGCGTTCGACATCACACGCTCCAGTGCGAAGCTGGATAACGGTGAAGAACGGCACGGACAGTCTTATCGTGTGAGCT ACTCGAAGCGCTTTGATGATACCGGAAGCCAGGTGACCTTTGCAGGTTATCGCTTCGCCGAAAAAGACTTTATGAGCTTT AACGATTATCTGAACTATCAGGCAGATAACGGCGATTTCATGCAGAACAAAGAGATGTACACCGTCTCCTTCAGCCAGCA ATTTGAAAGCGTTGGGCTGAGCGCTTACCTGAACTATTCGCATCAGACCTACTGGAATAATCCGGCGGAAGATCGCTATA GCCTGTCGCTGTCGCGCTATTTCGATATCGGGAAGATGAAAAATATTAGCGCCTCGCTGACCGCGTATCGCAACAAATTT AACGGCGAAAATGACGATGGCATGTATGTCTCTATGTCCGTGCCGATGGGCGATACCGGTTCGCTGGGACTGAATTCATC CTTTAGCGGTGATACCAGTACCCATAACCTGAGCTACTTCAATCGGCTCGGCAATGGCGATAACTACCGTATCGCCGCAG GCGGTAGCGATGACGGCGGTAATCTGAGTGGTTATTACGATCATCCGGGCGATTTGGCAGAGGTGACCGGCAACGTGGAT TACCAGCACGGGCAGTACAGCTCTGCCGGGGTATCGCTGCGCGGTGGGATGACGGCCACAGCGAAAGGCGCTGCGTTACA TCGCGCGAACGTCATGGGCGGGACGCGCGTGCTGCTGGATACCGGCGACGCAGCGGATGTTCCGGTTCAGGGTTATGCCG GCACGACCAAAACTAACCATTTTGGTAAGGCTGTGGTGACTGAAGTCAGCGACTACAGCAAAAACAGCCTGAACATCGAT ATCAACAACTTGCCTGAAAATGCCGAAGCGTCCGCATCGGTGGTGCAGGCCACCCTGACCGAAGGGGCGATTGGTTATCG CAAATTTAATGTGATTTCAGGCATCAAGGCGATGGCGATCATTCGCCTTGCAGACGGCACCTTCCCGCCGTTCGGCGCTA CGGTGCTTAACGCCGAAAAACAGGAAGTCGGCATCGTCAATGATGAAGGCCAGGCATACCTGAGCGGCCTTAAAGCGGGC CATAAATTACAGGTCAACTGGAATGGTGCGACACAGTGTGTGGTCACGCTGCCAGAACACCTGCAAGGGACGAGCGAGAA CCAAAATCTGCTGTTGCCGTGCCATTAA Protein sequence : MARIHNQQATITKLIVPSALALCICACLRTPAMAADDIQFNTDVLDVKDKKNIDLSQFSKRGYIMPGNYDFKIKVNQNEL EEQPVSVFAAENDKTQSIVCFTQDQIQKFGFKEKYLPQFKSWHNGQCVDITALQGVEVTPDLGNSTLMISVPQAYLEYTS DDWVPPSMWDDGIAGLLADYNVNAQTRHNEGGQGGDENTVSGNGTVGANMGPWRLRADWQANYDDRSDTSGQKKWTWSRF QMYRALPKMGAKLTVGEDYMNSDLFDSVRFAGASVVSDDNMLPPNLRGYAPEVTGVAKTNAKVTISQQGRVIYETQVAAG PFAIQDLNNSVSGALDVRVQEQDGSVQQYKVNTASIPYLTRPGSVRYKMYAGRPSTYDHHSEGSGFGSGEFSWGVSNGWS LYGGLVASRNYLATALGVGRDLMALGALAFDITRSSAKLDNGEERHGQSYRVSYSKRFDDTGSQVTFAGYRFAEKDFMSF NDYLNYQADNGDFMQNKEMYTVSFSQQFESVGLSAYLNYSHQTYWNNPAEDRYSLSLSRYFDIGKMKNISASLTAYRNKF NGENDDGMYVSMSVPMGDTGSLGLNSSFSGDTSTHNLSYFNRLGNGDNYRIAAGGSDDGGNLSGYYDHPGDLAEVTGNVD YQHGQYSSAGVSLRGGMTATAKGAALHRANVMGGTRVLLDTGDAADVPVQGYAGTTKTNHFGKAVVTEVSDYSKNSLNID INNLPENAEASASVVQATLTEGAIGYRKFNVISGIKAMAIIRLADGTFPPFGATVLNAEKQEVGIVNDEGQAYLSGLKAG HKLQVNWNGATQCVVTLPEHLQGTSENQNLLLPCH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 4e-167 | 46 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 5e-166 | 46 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 6e-166 | 46 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 4e-167 | 46 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 5e-167 | 46 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 4e-167 | 46 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 8e-173 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcU | YP_003212006.1 | outer membrane usher protein yfcU | VFG1548 | Protein | 3e-167 | 46 |
| yfcU | YP_003212006.1 | outer membrane usher protein yfcU | VFG0884 | Protein | 2e-167 | 46 |
| yfcU | YP_003212006.1 | outer membrane usher protein yfcU | VFG0895 | Protein | 2e-167 | 46 |
