Gene Information

Name : ybbA (DAMO_3154)
Accession : YP_003208026.1
Strain : Candidatus Methylomirabilis oxyfera
Genome accession: NC_013260
Putative virulence/resistance : Resistance
Product : transporter subunit: ATP-binding component of ABC superfamily
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2733654 - 2734397 bp
Length : 744 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : putative transporter

DNA sequence :
GTGGCAGCGCTGATTGAGATCGACAGCTTGATAAAGGACTACCGTCTGGGCGATGTGACTGTCCAGGCGCTGAGGGGCGT
CTCGTTCCTGATTGAACGAGGGGAGTTTGTGGCGATCATGGGCTCCTCCGGGTCCGGCAAATCGACCTTAATGCACATCC
TGGGTTGCCTGGACAAACCGACGTCCGGCAGCTACCGGTTTGACGGCGTCAGCGTGGGTCGGCTTAATCGAGATGAGCTG
GCCGCTCTCCGGAATAAGAAGATCGGCTTTGTCTTTCAGACTTTCAACCTCCTGGCCAGGACCAGCGCCTTAGCGAACGT
GGAACTTCCGCTCCTGTATAATGGCGCTGCGGCCCGCGAGCGGCGCGCCAGAGCGCTTGACGCCCTCCAGGCGGTTGGTC
TTGAGAATAGGACAGAGCATCATCCAAACCAGCTTTCCGGAGGGCAGCAGCAGCGGGTAGCCATTGCGCGGGCCCTTGTC
AATGAGCCACAGATCATCCTGGCGGATGAGCCCACCGGCAACCTCGATTCGAGAACCAGTTCAGAGATTATGGCGATATT
CCAGCGGCTGAATAAGGAGGCGGGGATCACCATTGTTCTGGTGACCCATGAGCCGGACATCGCGGCCTACGCCGGTCGCA
TACTCTTTTTCAGAGACGGCCGACTACTGCGGGATGAGGCGGTGGAGCAGCCAAGAGTCGCGCTCCATGAGTTGCAGCAG
CGCCTGCCGGACGAAGCGGGGTAG

Protein sequence :
MAALIEIDSLIKDYRLGDVTVQALRGVSFLIERGEFVAIMGSSGSGKSTLMHILGCLDKPTSGSYRFDGVSVGRLNRDEL
AALRNKKIGFVFQTFNLLARTSALANVELPLLYNGAAARERRARALDALQAVGLENRTEHHPNQLSGGQQQRVAIARALV
NEPQIILADEPTGNLDSRTSSEIMAIFQRLNKEAGITIVLVTHEPDIAAYAGRILFFRDGRLLRDEAVEQPRVALHELQQ
RLPDEAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-30 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-29 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-30 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_003208026.1 transporter subunit: ATP-binding component of ABC superfamily NC_012469.1.7686878. Protein 7e-51 55
ybbA YP_003208026.1 transporter subunit: ATP-binding component of ABC superfamily NC_008702.1.4606598. Protein 2e-42 51
ybbA YP_003208026.1 transporter subunit: ATP-binding component of ABC superfamily CP001581.1.gene598.p Protein 3e-38 44
ybbA YP_003208026.1 transporter subunit: ATP-binding component of ABC superfamily CP001581.1.gene798.p Protein 1e-36 44