Gene Information

Name : DAMO_1298 (DAMO_1298)
Accession : YP_003206193.1
Strain : Candidatus Methylomirabilis oxyfera
Genome accession: NC_013260
Putative virulence/resistance : Virulence
Product : response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1100514 - 1101881 bp
Length : 1368 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : putative regulator

DNA sequence : 
ATGAGCATGTCCCGCGCGAAGATCCTGGTCGTTGATGACGATACTGACATCCGGGAGGTGATTCGGGATCGCTTGAAGGC
TATGGGGTTCGAGGTCGTGGAGGCGTCGGACGGTGAGCAGGCGCTGGTGCGTCTGCGAGAGGAATTACCGACGATCACCC
TCCTTGACCTGCACATGCCGAAGAAGAGCGGACTGGAGGTGTTGCAGGCGATCCGGGAGAACGGGTTGGAGACGACGACC
ATCGTCATGACGGCGTATGCCACTATTGAAAAAGCGGTGGAGGCGATGCGGGTAGGCGCGTACGACTTTCTCACCAAGCC
GTTCAGTCCCGGACATCTGGAAGTGGTCATCGGCAAGGCATTGGAGCGGGAGGGGCTGAAGCGGGAAAACCTTTTGTTGA
CCGGTGAGGTCAGGGGACAAGGCCGGCCGATCATCGGACACAGTGAACAGATTCGGAATGCCGTCGACGTAGTCAGACGG
GGGGCGGCCGGCAGTTCGACGATTCTCCTGTTGGGAGAAACCGGAACCGGGAAAGAGGTGTTCGCGAGGGCTATTCACGA
ATGGAGTCCAAGGCGGGATAAACCTTTTGTGGTGGTGAATTGCGTGGCATTGTCGGAAGATCTGTTGGAAAGTGAGCTGT
TTGGTCACGAGCGTGGAGCCTTTACGGGCGCGCATCAGCGTAAGTGCGGCAAGCTGGAATTGGCCGACGGGGGTACCGCG
TTCCTCGATGAGATCGGCGACCTGAAGCCACGCCTGCAGGCAAAGCTCCTCCGCGTTCTTCAAGAGCGCGAGTTTGAGCG
AATCGGTGGGACAAAGCCGATACAGGTCGATCTCCGCTTCGTAGCCGCCACCAACCGACGCCTGGACAAAGCGGTTCGGG
AGGGGTTGTTCCGTGAGGACCTTTTCTTTCGACTCAATGCCGTGACCGTCTCGCTTCCACCACTTCGAGACCGCCCCGAA
GATATTGTCCCCCTGACCAATTACTTTCTGGCTCGATACAGCAGCAACCTGGGAAAGCGAATCAAGGAGATTACACCGGA
CGCATGGGAGTTGCTGCAACACTACCACTGGCCCGGCAACGTGAGGGAGTTGGCGAACTTCATCGAGCGGGCTGTTGTCC
TGAGTGTCCATGATCGGATCACATCAGAGGATCTTCCGCTGGCCATCCTCGCCGGCACATCGGAGCCGCCTGCCGGAGAA
ACGCCTCGCGATTTCCATGAGGCTGTGGTGGCCTACAAACGACAGCTCATCCGGGAGGCCCTCCACCGCTCAGGAGGCAA
TCAATCGCGGGCTGCGAGCGCCCTCGGCCTGCAGCGCACGTACCTTTCCCGTCTGATCAAGGAGCTGCAGGTCAGCGGGA
AGAGCTGA

Protein sequence : 
MSMSRAKILVVDDDTDIREVIRDRLKAMGFEVVEASDGEQALVRLREELPTITLLDLHMPKKSGLEVLQAIRENGLETTT
IVMTAYATIEKAVEAMRVGAYDFLTKPFSPGHLEVVIGKALEREGLKRENLLLTGEVRGQGRPIIGHSEQIRNAVDVVRR
GAAGSSTILLLGETGTGKEVFARAIHEWSPRRDKPFVVVNCVALSEDLLESELFGHERGAFTGAHQRKCGKLELADGGTA
FLDEIGDLKPRLQAKLLRVLQEREFERIGGTKPIQVDLRFVAATNRRLDKAVREGLFREDLFFRLNAVTVSLPPLRDRPE
DIVPLTNYFLARYSSNLGKRIKEITPDAWELLQHYHWPGNVRELANFIERAVVLSVHDRITSEDLPLAILAGTSEPPAGE
TPRDFHEAVVAYKRQLIREALHRSGGNQSRAASALGLQRTYLSRLIKELQVSGKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
norR ABD94719.1 putative nitric oxide reductase transcriptional regulator Not tested ExoU island B Protein 2e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DAMO_1298 YP_003206193.1 response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator BAC0467 Protein 8e-83 43
DAMO_1298 YP_003206193.1 response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator BAC0089 Protein 5e-78 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DAMO_1298 YP_003206193.1 response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator VFG0116 Protein 5e-75 44
DAMO_1298 YP_003206193.1 response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator VFG1249 Protein 1e-65 43