Gene Information

Name : Namu_4420 (Namu_4420)
Accession : YP_003203696.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Resistance
Product : cystathionine gamma-synthase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : 2.5.1.48
Position : 4904157 - 4905326 bp
Length : 1170 bp
Strand : -
Note : PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: scl:sce6169 cystathionine gamma-synthase

DNA sequence :
ATGACGCCTGCCCCCGGTCCCCACGACCCGCAGTCCCCGGGTTTTGCCACCCGCGCCATCCACGCCGGCCAGGATCCGGA
CCCGCTGACCGGAGCGGTGGCCGTGCCGATCTACCAGACCTCGACGTTCGCGCAGGACGAGGTCGGCCAGCCGCGGGCCG
GCTACGACTACTCCCGCGCCGGCAACCCGACCCGGACTGCGCTGGAACAGGCGCTGGCCGCCTTGGAGGGGGGTCGCTCG
GGTTTCGCCTTCGCCTCCGGGATGGCCGCCGCCGATACCTACATCCGCGCCGCGCTGCGACCGGGCGACCACCTGATCCT
GCCCGACGACGCCTACGGCGGCACCTTCCGCCTGGTCGACAAGATCTGCGTGCCATGGGGTCTGACCTACTCGACGGTGT
CGCTGGGCGACCTGGCCGCGGTCCGCGCGGCGATCCGGCCGACCACCAAGGTCATCTGGTGCGAGACGCCGACCAACCCG
CTGCTGGGCATCGCCGACATTGCCGCACTGGCCGAGATCGCCCACGAGAGCGGTGCGAAGCTGTTGGTGGACAACACCTT
TGCCTCGCCCTACCTGCAGCAGCCGCTGGCTCTGGGAGCCGACGTGGTGCTGCACTCGACGACCAAGTACGTGGGCGGGC
ATTCCGACGTGATCGGCGGGGCGTTGATCGTGGACGACCCGGAGTTGGCCGAGGCCCTGGCCTTCCACAGCAAGTCGATG
GGCGCGGTGCCCGGCCCGGTCGACGCCTGGCTGACCCTGCGCGGCGTGAAAACCCTGGCCGTGCGGATGGACCGGCACTG
TGACAACGCCGAGCGGGTGGTGGAGCTGCTGGTCGGGCACCCCCGGGTGGCCCGGGTCTACTACCCGGGCCTGCCCGCCC
ATCCGGGTCACGCGATCGCGGCGCGGCAGATGCGCCGGTCCGGCGGCATGGTGTCCTTCAGCGTGGTCGGCGGGCAGGAG
GAGGCCCTCAAGGTGTGCCGGCGAACCCAGTTGTTCACGCTGGGGGAGTCGCTCGGTGGGGTGGAATCGTTGATCGAGCA
TCCCGGGCTGATGACCCACGCCAGCGTCGCCGGCTCCGCGCTGCAGGTGCCGGACGACTTGATCCGGCTCTCCGTCGGCA
TCGAGGACGCCGACGACCTGCTGGCCGACCTGCGGGACGCCCTCGACTGA

Protein sequence :
MTPAPGPHDPQSPGFATRAIHAGQDPDPLTGAVAVPIYQTSTFAQDEVGQPRAGYDYSRAGNPTRTALEQALAALEGGRS
GFAFASGMAAADTYIRAALRPGDHLILPDDAYGGTFRLVDKICVPWGLTYSTVSLGDLAAVRAAIRPTTKVIWCETPTNP
LLGIADIAALAEIAHESGAKLLVDNTFASPYLQQPLALGADVVLHSTTKYVGGHSDVIGGALIVDDPELAEALAFHSKSM
GAVPGPVDAWLTLRGVKTLAVRMDRHCDNAERVVELLVGHPRVARVYYPGLPAHPGHAIAARQMRRSGGMVSFSVVGGQE
EALKVCRRTQLFTLGESLGGVESLIEHPGLMTHASVAGSALQVPDDLIRLSVGIEDADDLLADLRDALD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-62 47
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-61 46
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 3e-49 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_4420 YP_003203696.1 cystathionine gamma-synthase BAC0207 Protein 3e-51 44