Gene Information

Name : Namu_3828 (Namu_3828)
Accession : YP_003203114.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4201380 - 4202060 bp
Length : 681 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ccs:CCNA_02006 lipoprotein releasing system ATP-binding protein LolD

DNA sequence : 
GTGAGCGAGATCCTACTGTCGGCAACGGGTATCGAGCGCAGCTTCGGCCAGACCAGGGCGCTGCGGGGCGCCGACCTGAC
CGTCGAAGCCGGCGAGATCGTCGCGGTGATCGGGCCGTCCGGGTCGGGCAAGTCGACGCTGTTGCATTGCGCGGCCGGGA
TCCTGCCGGTGGACGCAGGCACGGTCAGCTACCGCGGCGACGACCTGGCCAGGCTGTCCGACCGGGACCGATCACGACTG
CGGTTGCGCGAATTCGGCTTCGTCTTCCAGTTCGGCCGGTTGATTCCCGAGCTGACCTGCCGGGACAACGTGGCTGTCCC
GCTGCGGCTGGCCGGGACGGGGCGCCGGGCGGCGCAGTCCGTCGCCGACGAGTGGCTCGGCCGGCTGGATGTCGAGCAGA
TCGCCGGCCGCCGCCCTGGGGAGGTCTCCGGCGGGCAGGCGCAGCGGGTCGCGCTGGCCTGCGCGCTGGCACACGGCCCG
CGGGTCATCTTTGCCGACGAGCCGACCGGCGCACTGGACTCGCTGCAGGGCGAGGCGGTCATGCGGCTGCTCACCGCCAC
GGTGCGGCACACCGGCGCCGCCCTGGTCCTGGTCACGCACGAACCCCGGGTGGCCGCATACGCCGACCGCGAGGTCCTCG
TCCGCGACGGACGCACCGGCGAGACCCGGGCCGCCGCATGA

Protein sequence : 
MSEILLSATGIERSFGQTRALRGADLTVEAGEIVAVIGPSGSGKSTLLHCAAGILPVDAGTVSYRGDDLARLSDRDRSRL
RLREFGFVFQFGRLIPELTCRDNVAVPLRLAGTGRRAAQSVADEWLGRLDVEQIAGRRPGEVSGGQAQRVALACALAHGP
RVIFADEPTGALDSLQGEAVMRLLTATVRHTGAALVLVTHEPRVAAYADREVLVRDGRTGETRAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-29 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-29 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-29 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_3828 YP_003203114.1 ABC transporter NC_008702.1.4606598. Protein 9e-23 44