Gene Information

Name : Namu_3750 (Namu_3750)
Accession : YP_003203037.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4116025 - 4116687 bp
Length : 663 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bbr:BB4471 two-component response regulator

DNA sequence : 
ATGCGGGTCCTGGTCGTCGAGGACGCCCAACGGCTGGCGGACGCGATCGCCCGCGGCCTGCGGGCCGAGGGCATGGCCGT
CGATGTCGCCTACGACGGGGTCGAGGGGCATCAGAAGGCGATGACCACGCGCTACGACGTGGTGGTGCTGGACCGGGATC
TGCCGGAGATGCACGGTGACGACGTGCTGACCGAGATCGTGTCGGCCTCCGACACGACCCGGGTGCTGATGCTGACCGCG
TCGGCCGGCGTGGAGGACCGGGTGGATGGCCTGTCCCTGGGCGCCGACGACTACCTGACCAAGCCGTTCGCCTTTCCCGA
GCTGGTGGCCCGGATCCGGGCGCTGGGCCGCCGCTCGTCACCGGCGGTCAAGCCGGTGCTGCGGGCCGGCGACCTCGAAC
TCGACCCGGCCAAGCGCACGGTCACCCGGTCCGGCCGGGCGCTGGAACTGACCCGCAAGGAGTTCGGCGTACTCGAGGTG
CTGCTGGCGGCCGGGGGTTCGGTGGTCTCCAGCGAGGAGCTGCTGGAGCGGGTGTGGGACGAGAACGCCGACCCGTTCAC
CACCACCGTGCGGGTGACCATGATGACCCTGCGCCGCAAGCTCGGTGATCCCGGAATCATCGACACGGTGGTCGGTTCCG
GCTACCGCGTGGCCATCGACTGA

Protein sequence : 
MRVLVVEDAQRLADAIARGLRAEGMAVDVAYDGVEGHQKAMTTRYDVVVLDRDLPEMHGDDVLTEIVSASDTTRVLMLTA
SAGVEDRVDGLSLGADDYLTKPFAFPELVARIRALGRRSSPAVKPVLRAGDLELDPAKRTVTRSGRALELTRKEFGVLEV
LLAAGGSVVSSEELLERVWDENADPFTTTVRVTMMTLRRKLGDPGIIDTVVGSGYRVAID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator U82965.2.orf14.gene. Protein 2e-45 54
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator Y16952.3.orf35.gene. Protein 4e-40 52
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator BAC0125 Protein 9e-31 46
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator BAC0083 Protein 6e-32 44
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator BAC0347 Protein 3e-31 44
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator BAC0197 Protein 6e-30 43
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator BAC0638 Protein 7e-26 42
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator BAC0111 Protein 5e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-30 43
Namu_3750 YP_003203037.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-30 41