Gene Information

Name : Namu_3483 (Namu_3483)
Accession : YP_003202797.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3830429 - 3831334 bp
Length : 906 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: hypothetical protein

DNA sequence : 
CTGCGGTGGGGAGTCGAGCCGATCTGCAAGGTCCTGTCCGAGCACCTGGGTCTGCGGATCGCCCCGTCCACCTACTACGA
GCACGCCGCCCGGCCCGCCCAGACGCGGCCGGCCGCGGTGCGGGATGCGGCCCTGCTCGAGCAGATCCGCCGGGTCCACA
CAGAGAACAACCACGGCACCTATGGTGCCCGGAAGGTGTGGCTGCAGCTGAACCGGGAAGGCGTCTCGGTGGCCCGGTGC
ACCGTGGAACGGCTGATGCGCTCCGCCGGCCTGGTCGGTGTCCGCCGGGGCAAGATCAAGCGGACGACGGTCGCCGATCC
GGGTGCGCAGCGGCCCGCTGACCTGGTGCAACGACGGTTCGGCGCGCTCGTGCCGGATCGTTTGTGGGTGGCCGACATCA
CCTACGTGAGTACCTGGTCGGGATGGGTGTACGTGGCGTTGGTGACCGATGCCTACGCCCGCCGCATCCTGGGCTGGCGG
GTCGCGACCACGATGACCACACAGCTCGTCCTGGACGCGTTGGAGCAGGCCATCTGGACCCGTCAACGGGCCGACCGGAC
TGTGGAACACGTCGTGGCGCACAGCGACCGCGGGTCCCAGTACACATCCATCCGGTACTCCGAACGCCTCGCCGAGGTCG
GCATCGCAGCATCGGTCGGCAGCGTCGGCGACTCCTACGACAACGCCCTGGCCGAAACAATCAACGGCCTGTACAAGGCC
GAAGTGATCCGTCACCGCGGCCCCTGGCGCAGCATCGACTCCGTCGAATTCGCCACCGCCGAATGGATCGACTGGTACAA
CCACCGACGCCTGCACGAGTACTGCGGCGACATCCCACCAGCCGAACTCGAGGACGCGTTCTACGCTCACCACCGAGCCC
AGCAAACCGCCGGACTCACCGTTTGA

Protein sequence : 
MRWGVEPICKVLSEHLGLRIAPSTYYEHAARPAQTRPAAVRDAALLEQIRRVHTENNHGTYGARKVWLQLNREGVSVARC
TVERLMRSAGLVGVRRGKIKRTTVADPGAQRPADLVQRRFGALVPDRLWVADITYVSTWSGWVYVALVTDAYARRILGWR
VATTMTTQLVLDALEQAIWTRQRADRTVEHVVAHSDRGSQYTSIRYSERLAEVGIAASVGSVGDSYDNALAETINGLYKA
EVIRHRGPWRSIDSVEFATAEWIDWYNHRRLHEYCGDIPPAELEDAFYAHHRAQQTAGLTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-50 58
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-57 58
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-49 57
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-62 54
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-62 54
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-62 54
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 4e-62 54
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-60 54
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-59 54
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-60 54
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-59 54
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-59 54
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-61 54
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-59 54
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 6e-62 54
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-61 54
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-59 53
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-61 53
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 8e-58 53
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-61 53
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-41 51
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-50 49
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-38 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_3483 YP_003202797.1 Integrase catalytic subunit VFG1602 Protein 5e-58 53