Gene Information

Name : Namu_3140 (Namu_3140)
Accession : YP_003202462.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3457178 - 3457987 bp
Length : 810 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rsq:Rsph17025_3334 hypothetical protein

DNA sequence : 
ATGACCGTCACCACCACCCCGGCGCTGGCCGCGCGCGGCGTCACCCTGGCCTACGACCAGGCCGTGGTGTTCCGCGAGCT
GGACCTGAGTATCGAGCCGGGTCGGGTCACCACCCTGATCGGCGCGAACGGCAGCGGCAAGTCCACCCTGCTCAAGGCCT
TCGGCCGGTTGCTGACCCCGAGCGCCGGCGGCATCGAGCTGGACGGGGCACCGGCGCGCTCGCTGCCGACCCGGCAGATC
GCCCGGCGGCTGGCGATCCTGCCGCAGAAGCCGCTCACCCCGTCGGCGACCAGCGTGCGGGATCTGGTCTCGCGAGGCCG
GCATCCGCACCAGAGCCTGCTGCGGCCCTGGACCGAGCAGGACGCGGCCGCGGTCGCCGACGCGCTGGCCGCGACCGGGA
TGACCGAGCTCGCCGATCGGGACGCCGCCTCGCTGTCCGGCGGGCAGCTGCAGCGGGCCTGGATCGCGCTGGTGCTGGCC
CAACAGACGCCGATCATCCTGCTGGACGAGCCGACCACGTTCCTGGATCTGAGCCACCAGCTCGATGTGCTGCACCTGAT
CCGGTCGATCAACGCCGAGCGGGGCGCGACGGTGGTGATGGTGCTGCACGACCTGTCGCTGGCCGGCCGGTTCTCCGACC
GGCTGGTGGCCGTGGGCCGCGGCCGGGTGCTGGCCGACGGACCGCCGTGGGAGGTACTGACCCCCACGGTGCTGCGGGAC
GCGTTCGACCTGGACGCGCGGGTGATCGCCGATCCCTGCACCGGGTCGCCGCTGGTTGTGCCTGAGGATAGGCTAACCTA
CCTTTCGTGA

Protein sequence : 
MTVTTTPALAARGVTLAYDQAVVFRELDLSIEPGRVTTLIGANGSGKSTLLKAFGRLLTPSAGGIELDGAPARSLPTRQI
ARRLAILPQKPLTPSATSVRDLVSRGRHPHQSLLRPWTEQDAAAVADALAATGMTELADRDAASLSGGQLQRAWIALVLA
QQTPIILLDEPTTFLDLSHQLDVLHLIRSINAERGATVVMVLHDLSLAGRFSDRLVAVGRGRVLADGPPWEVLTPTVLRD
AFDLDARVIADPCTGSPLVVPEDRLTYLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-59 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 8e-49 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-49 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-49 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-49 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-49 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-48 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-49 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-49 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-49 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-49 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_3140 YP_003202462.1 ABC transporter BAC0164 Protein 5e-49 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_3140 YP_003202462.1 ABC transporter VFG1042 Protein 5e-49 46
Namu_3140 YP_003202462.1 ABC transporter VFG0925 Protein 1e-52 46