Gene Information

Name : Namu_3138 (Namu_3138)
Accession : YP_003202460.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Virulence
Product : transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 3455145 - 3456143 bp
Length : 999 bp
Strand : +
Note : PFAM: transporter permease; KEGG: sme:SMa1745 ABC transporter permease, Fe3+- siderophore transporter

DNA sequence :
GTGCTTCGTTCCTCCACCCGGCGACGTCCACTGCTGGCGCTGCTGCTCGCCCTGGCCGCGGCCGGCGCGCTGAGCCTGCT
GCTGGGCAGCAACCTGCTCGACGCCGGCACCGTGCTCGAGCGGCTGGTCGACCCCACCCTGGACACCGATGCCGTCGTCT
GGGGCTCCCGGGTGCCGCGAACCGTGCTCGGCGTGCTCGTCGGGTGCTGCCTGGGCGTGGCCGGTGCGGTGATGCAGGGC
CAGACCCGCAACCCGCTGGCCGACCCGGGCATCTTCGGTGTCTCGGCCGGGGCGAGCCTGGCCGTGGTGATCGGCGTCTA
CCTGTTGGGGGCCAGCTCGGTGCTGACCACGCTGTGGCTGGCCTTGGCCGGCGCCGTCGTGGCCAGCGTGGTGGTCTTCG
CGGTCGCGGCGATGGGGCGGGGCCTGTCCAGCCCGGTCCCGCTGGCCATCGCCGGTACCGCGGTGACCGCGCTGCTGATC
GCGCTGACCTCGTACCTGGTGCTCAGCGACCAGAAGACGCTGGCCGCCTACCGGATCTGGGTCGTCGGGTCGCTGTCCGG
CCGCACCCTGACCGGCATCTGGGCGGCCGTCGCGTTCGCCGGCGTCGGGCTGGTGCTCGCGCTGGCCAACGCCCGGGCGC
TGAATTCGCTGGCTCTGGGCACCGAGCTGGCCCACGGGCTGGGCGAGAACCTGGTGCGGGCCCGGGTGGTCGGGCTGGCG
GCGATCACCCTGCTCACCGCGGCCGCGGTGGCGCTCACCGGTCCGATCGGATTCGTCGGCCTGACCGCCCCGCACCTGGC
CCGCTCCCTGGTCGGCTCCGACCACCGCTGGCTGCTGCCCGCCTCCGGGCTGATCGGTGGGATCGTGCTGCTGGCCTGCG
ACGTGGTCGGCCGGCTGATCGGCGGCAACGGCGAGGTGCCGGTCGGAGTGGTGCTCTCGGTGCTCGGCGGCATCTGTTTC
GTGCTGATCGTGCGGCGCGGCCGGATGGCGGTGCTGTAG

Protein sequence :
MLRSSTRRRPLLALLLALAAAGALSLLLGSNLLDAGTVLERLVDPTLDTDAVVWGSRVPRTVLGVLVGCCLGVAGAVMQG
QTRNPLADPGIFGVSAGASLAVVIGVYLLGASSVLTTLWLALAGAVVASVVVFAVAAMGRGLSSPVPLAIAGTAVTALLI
ALTSYLVLSDQKTLAAYRIWVVGSLSGRTLTGIWAAVAFAGVGLVLALANARALNSLALGTELAHGLGENLVRARVVGLA
AITLLTAAAVALTGPIGFVGLTAPHLARSLVGSDHRWLLPASGLIGGIVLLACDVVGRLIGGNGEVPVGVVLSVLGGICF
VLIVRRGRMAVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 1e-08 42
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 1e-08 42
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 1e-08 42
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 1e-08 42
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 5e-22 41
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 6e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_3138 YP_003202460.1 transporter permease VFG0926 Protein 4e-16 46