Gene Information

Name : Namu_2566 (Namu_2566)
Accession : YP_003201910.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2815046 - 2815735 bp
Length : 690 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_2892 transcriptional regulator

DNA sequence :
ATGCGAAAGGTTCTGGTCGTCGACGACGAGCCGCACATCCGGACCGTGTTACGCGGGTATCTGGAGGCCGACGGGTTCGA
GGTGGTCGACGCCGCGGACGGGGAGACCGCAGTGGATCTGGTCCGGCGTGATCCGCCGGACTTGGTGCTGCTGGACGTGA
TGCTGCCGGGGATCGACGGTCTGGAGGTTCTGCGTCGGTTGCGGGCCGTGAGCGATGCGTACGTCATTCTGGTCACCGCG
CGGGCCGAGGAGGTCGACAAGCTCGTCGGGCTCGCGGTGGGGGCGGATGACTACGTGACCAAGCCGTTCAGCCCGCGGGA
GGTCACTGCCCGGGTGAAGGCGGTGCTCCGGCGGGATCGCGGCGGGCGAACCGGAGAGGATGTGGTGCTGCGGTTCCGGG
GCCTATCGATCGATCTGGCGGGTCGGGAGGTTCACGCCGACGGAGCGCCGGTGGCGTTGTCGAGTCTGGAGTTCGACCTG
CTGGCCGCACTGGCCGGGGCGCCCGGACGGGTCTTCTCCCGCGCCCAACTGCTCGAGCGGGTGTGGGGGTACGACTTCTA
TGGCGACGAGCGGGTCGTCGATGTGCACATCCGGAGCCTGCGGTCGCGGTTGGGTGACCCGGCCGCCGACCCGCGTCTGA
TCGCCACCGTTCGGGGTGTGGGTTACAAGTTCGTGGGCAGCCCTCGATGA

Protein sequence :
MRKVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVMLPGIDGLEVLRRLRAVSDAYVILVTA
RAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRRDRGGRTGEDVVLRFRGLSIDLAGREVHADGAPVALSSLEFDL
LAALAGAPGRVFSRAQLLERVWGYDFYGDERVVDVHIRSLRSRLGDPAADPRLIATVRGVGYKFVGSPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-38 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 7e-37 42
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-16 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 4e-38 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 8e-39 47
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 1e-38 44
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 4e-37 44
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator CP000034.1.gene3671. Protein 9e-39 44
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator BAC0197 Protein 7e-30 44
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 6e-35 44
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 3e-37 43
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator CP000647.1.gene2531. Protein 3e-33 42
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator CP000034.1.gene2186. Protein 6e-32 42
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_002695.1.916589.p Protein 5e-32 42
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator BAC0596 Protein 5e-32 42
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator CP001918.1.gene3444. Protein 4e-31 42
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator BAC0039 Protein 6e-32 42
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator CP001138.1.gene2239. Protein 5e-32 42
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_010410.6002989.p0 Protein 3e-32 41
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_011595.7057856.p0 Protein 3e-32 41
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator BAC0125 Protein 1e-27 41
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator CP004022.1.gene1676. Protein 1e-30 41
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator NC_008702.1.4607594. Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator VFG1386 Protein 3e-34 46
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator VFG1389 Protein 6e-30 45
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-36 43
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator VFG1563 Protein 3e-38 42
Namu_2566 YP_003201910.1 winged helix family two component transcriptional regulator VFG1702 Protein 3e-37 42