Gene Information

Name : Namu_2421 (Namu_2421)
Accession : YP_003201783.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2672215 - 2673075 bp
Length : 861 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: hch:HCH_03795 ABC-type cobalamin/Fe3+- siderophores transporter, ATPase components

DNA sequence : 
ATGACGACCAACCCCGACCCCACCCCGGAGCGGGCGGTTCGGTTGCAGGCGCGCGGCCTGACCACCGGTTACGGCGGCCG
CCCGATCATCACCGATCTGGACATTCCAGTGCCCGACGGCAGTTTCACCGTGATCATCGGCCCGAACGGGTGTGGCAAGT
CGACCCTGCTGCGATCGCTGGCCCGGCTGATCAAGCCGGCCGGTGGCGCCGTCCTGCTCGACGGAGCCGACATAGCCCAC
ACCCGGGCCAAGCTGCTGGCCCGGCAGATCGGACTGCTGCCGCAGACCTCGACCGCTCCCGAGGGCATCACCGTGATCGA
CCTGGTCAGCCGCGGCCGGCACCCCCACCAGAGCGCCCTCAAGCGGTGGAGCGAGGCGGACGAGAAGGCCGTGCAGGACG
CGCTGGCCCTGACCCGGCTGACCGAGCTGACCACCCGCGTCGTCGACGAACTCTCCGGCGGGCAGCGGCAACGGGTGTGG
ATCGCGATGGCCCTGGCCCAGCAGACCCCGCTGCTGTTGCTCGACGAACCGACGACCTACCTGGACATCTCGCACCAGAT
CGACGTGCTGGACCTGTGCACGAGCCTGCAGCGGGCCGGCCGGACCCTGGTGGCCGTGCTGCACGACCTGAACCAGGCCG
CCCGTTACGCCACCCACCTGATCGTGATGCAGGACGGCCGGCTCGTCGCCCGCGGCCACCCCGCCGACGTCGTCACCGCC
GAGCTGATCCGGCAGGTGTTCGGCGTGGGCGTGCGCGTCATCGCCGACCCGGAGACCGGCCGGCCGCTGATCGTCCCGCA
CGCCCCGGCCCCGTCCCCCGCCCCCCACGCTCGGCCCACCCCACCGGAAGGACCCGCATGA

Protein sequence : 
MTTNPDPTPERAVRLQARGLTTGYGGRPIITDLDIPVPDGSFTVIIGPNGCGKSTLLRSLARLIKPAGGAVLLDGADIAH
TRAKLLARQIGLLPQTSTAPEGITVIDLVSRGRHPHQSALKRWSEADEKAVQDALALTRLTELTTRVVDELSGGQRQRVW
IAMALAQQTPLLLLDEPTTYLDISHQIDVLDLCTSLQRAGRTLVAVLHDLNQAARYATHLIVMQDGRLVARGHPADVVTA
ELIRQVFGVGVRVIADPETGRPLIVPHAPAPSPAPHARPTPPEGPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-57 53
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-58 50
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-58 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-58 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-58 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-51 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 9e-58 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 9e-58 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-50 46
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-32 45
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-54 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-54 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-54 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-54 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_2421 YP_003201783.1 ABC transporter BAC0164 Protein 1e-51 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_2421 YP_003201783.1 ABC transporter VFG0925 Protein 4e-65 57
Namu_2421 YP_003201783.1 ABC transporter VFG1042 Protein 1e-51 49