Gene Information

Name : Namu_1236 (Namu_1236)
Accession : YP_003200630.1
Strain : Nakamurella multipartita DSM 44233
Genome accession: NC_013235
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1357855 - 1358730 bp
Length : 876 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: hypothetical protein

DNA sequence : 
GTGTTGACCGAGCACCTGGGTCTGCGGATCGCCCCGTCCACCTACTACGAGCACGCCGCCCGGCCCGCCCAGACGCGGCC
GGCCGCGGTGCGGGATGCGGCCCTGCTCGAGCAGATCCGCCGGGTCCACACAGAGAACAACCACGGCACCTATGGTGCCC
GGAAGGTGTGGCTGCAGCTGAACCGGGAAGGCGTCTCGGTGGCCCGGTGCACCGTGGAACGGCTGATGCGCTCCGCCGGC
CTGGTCGGTGTCCGCCGGGGCAAGATCAAGCGGACGACGGTCGCCGATCCGGGTGCGCAGCGGCCCGCTGACCTGGTGCA
ACGACGGTTCGGCGCGCTCGTGCCGGATCGTTTGTGGGTGGCCGACATCACCTACGTGAGTACCTGGTCGGGATGGGTGT
ACGTGGCGTTGGTGACCGATGCCTACGCCCGCCGCATCCTGGGCTGGCGGGTCGCGACCACGATGACCACACAGCTCGTC
CTGGACGCGTTGGAGCAGGCCATCTGGACCCGTCAACGGGCCGACCGGACTGTGGAACACGTCGTGGCGCACAGCGACCG
CGGGTCCCAGTACACATCCATCCGGTACTCCGAACGCCTCGCCGAGGTCGGCATCGCAGCATCGGTCGGCAGCGTCGGCG
ACTCCTACGACAACGACCTGGCCGAAACAATCAACGGCCTGTACAAGGCCGAAGTGATCCGTCACCGCGGCCCCTGGCGC
AGCATCGACTCCGTCGAATTCGCCACCGCCGAATGGATCGACTGGTACAACCACCGACGCCTGCACGAGTACTGCGGCGA
CATCCCACCAGCCGAACTCGAGGACGCGTTCTACGCTCACCACCGAGCCCAGCAAACCGCCGGACTCACCGTTTGA

Protein sequence : 
MLTEHLGLRIAPSTYYEHAARPAQTRPAAVRDAALLEQIRRVHTENNHGTYGARKVWLQLNREGVSVARCTVERLMRSAG
LVGVRRGKIKRTTVADPGAQRPADLVQRRFGALVPDRLWVADITYVSTWSGWVYVALVTDAYARRILGWRVATTMTTQLV
LDALEQAIWTRQRADRTVEHVVAHSDRGSQYTSIRYSERLAEVGIAASVGSVGDSYDNDLAETINGLYKAEVIRHRGPWR
SIDSVEFATAEWIDWYNHRRLHEYCGDIPPAELEDAFYAHHRAQQTAGLTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 6e-50 58
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-57 58
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-49 57
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 4e-46 57
Z1221 NP_286756.1 transposase Not tested TAI Protein 6e-61 55
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-61 55
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-61 55
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-61 55
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-60 55
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-58 55
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-59 55
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-59 55
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 8e-61 55
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-60 55
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-58 54
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-58 54
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-58 54
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-58 54
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-60 54
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-60 54
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 8e-57 53
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-40 52
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-48 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-35 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Namu_1236 YP_003200630.1 Integrase catalytic subunit VFG1602 Protein 5e-57 53