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Name : Dret_2415 (Dret_2415) Accession : YP_003199275.1 Strain : Desulfohalobium retbaense DSM 5692 Genome accession: NC_013223 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 2766065 - 2767396 bp Length : 1332 bp Strand : - Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein DNA sequence : ATGCAATCACAGCTGCACCAGCTGCCAGAGTTGCGCTTGCTTCAGGACAAGAAGCAGGCTGTGGCCGTTGTGGGCCTCGG GTATGTGGGGCTCCCTCTGGCTGTGGCCCTGGCCCGCCATTTTCGGGTTATCGGATTTGATATCGCCCGGGAGCGGGTGG ATGAACTTCAGGCTGGCCGGGATTCAACGGGTGAGATTGATCCCGCAGTGCTGGGAGAAGTGGACCTCGAATTGACCTGT GATCCAGAAATATTGGCTCAGGCCACGGTGTTTATCGTTGCCGTGCCCACCCCCATCGATGCCAACCGGCGCCCTGATCT CGGGCCGACCCGCGGTGCGACGCGGACCGTGGCCGGCGCCATGGGCCCGGGCAGTGTGGTGGTCTTTGAATCCACCGTCT ACCCGGGGGTGACCGAAGAGGTCTGCGTGCCGCTTTTGGAAGAGGTCTCCGGTCTGCAATGCGGGCGTGATTTCCGGGTC GGGTATTCCCCGGAGCGGATCAATCCTGGGGACAAGGACAACCGGCTGGAAAACATTATCAAGGTTGTTGCCGGTCAGGA CCAGGCGACCACCGACCTGCTGAGCGATCTCTACGGCAGTGTCGTGCACGCCGGAATCCACAAGGCCCCGACCATCAAGG TCGCGGAAGCAGCCAAGGTGATTGAAAATACCCAGCGCGATCTGAATATCGCCCTGATGAACGAATTGGCCCAGATGTTC CACAAAATGGATATCGACACCCAGGATGTCCTGGCCGCTGCGGGGACGAAATGGAATTTTCTGCCCTTTCGCCCCGGCCT TGTCGGGGGGCATTGCATAGGCGTCGATCCCTATTATCTGACGTTCAAGGCCGAGGCCCTTGGGCTGCACCCGCAGATCA TCCTTGCCGGCCGGCGTATCAACGACGGCATGGGCGCTTATGTGGCCCAGACGGCGGTCAAATCCCTTGTGCAAAACGGC TCGCCTGTCCACGGTGCACGCGTGGCGGTTTTAGGGGTGGCCTTCAAGGAAAATGTGCCCGATCTGCGCAATACCCGGGT GGTCGACATTGTCCACGAGTTGCAGGACTATCAGATTGAAGTGCTGGTGCACGATCCCCTCGTTTCCGCTGACGAAGCTC GGGAGGAATACGGCCTGGAACTCGTCGACTGGGATGCCTTGAGCGATCTCGACGGACTTATCCTGGCTGTGGGGCATCGC CCCTACACTGCATTGTCCCCTCAGCGCATTGCCGAGATGTTCGCCTCCGGACAGGGATTGGTCATGGATGTCAAAGCGGC CCTGGACGGGGAGATGCTCCGGGAGCAGGGCCTGACCTATTGGCGGCTGTAG Protein sequence : MQSQLHQLPELRLLQDKKQAVAVVGLGYVGLPLAVALARHFRVIGFDIARERVDELQAGRDSTGEIDPAVLGEVDLELTC DPEILAQATVFIVAVPTPIDANRRPDLGPTRGATRTVAGAMGPGSVVVFESTVYPGVTEEVCVPLLEEVSGLQCGRDFRV GYSPERINPGDKDNRLENIIKVVAGQDQATTDLLSDLYGSVVHAGIHKAPTIKVAEAAKVIENTQRDLNIALMNELAQMF HKMDIDTQDVLAAAGTKWNFLPFRPGLVGGHCIGVDPYYLTFKAEALGLHPQIILAGRRINDGMGAYVAQTAVKSLVQNG SPVHGARVAVLGVAFKENVPDLRNTRVVDIVHELQDYQIEVLVHDPLVSADEAREEYGLELVDWDALSDLDGLILAVGHR PYTALSPQRIAEMFASGQGLVMDVKAALDGEMLREQGLTYWRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-102 | 54 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 2e-92 | 50 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 2e-92 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dret_2415 | YP_003199275.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 7e-93 | 50 |
