Gene Information

Name : Dret_2225 (Dret_2225)
Accession : YP_003199087.1
Strain : Desulfohalobium retbaense DSM 5692
Genome accession: NC_013223
Putative virulence/resistance : Unknown
Product : ABC transporter
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 2526944 - 2528542 bp
Length : 1599 bp
Strand : +
Note : PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pag:PLES_35201 putative ATP-binding component of ABC transporter

DNA sequence :
ATGACCGGTGTGCGGCGTATTGTCGAGATCAAAAACCTGTGCGTCTGGTTCCCGGGGGACCAGGAGCCGGCTGTCAACGG
TGTGAGCTTGTCCTTGGAGGCCGGACAAACCCTGGGGCTGGTAGGCGAAAGCGGCTCCGGAAAATCCGTCACCGCCCTGG
CCCTGATGGGCCTGCTGCCCCCGGCAGCCCGCTGCACGGCTGAAAGACTCGAGTTGAACGCTACCGATATCCTGCGCGCC
AATGCCAAAACTGTGCGGGCTCTGCGCGGCAACTCCGCGGCCATGGTCTTTCAAGAGCCCTTGTCCGCTCTGAACCCGCT
GCACACCATTGAACGGCAAATCACCGAACCGCTGCAATGGCATACGGGTCTTTCCGGAGCGAACGCCCGCAAGAAGGCGA
TTGAGCTCCTGGAGATGGTCGAAATCAAGGAACCGGCGGCCAAACTCACGACCTATCCCCATCAACTCTCAGGGGGGCAG
CGCCAGCGGGTCATGATCGCCATGGCCCTTTCCACATCCCCGCGGGTCCTTATTGCCGACGAACCAACGACCGCCCTGGA
TGTCACCGTCCAGCGCCAGATTTTGGACCTGCTGCAGCGGTTGCAGCACAATTTCGATATGGCCTTGATGCTCATTTCCC
ATGACCTGGCCATGATCAAGGACGTTACCGCTGACACCGCGGTCATGAAGCAGGGCCGCCTGGTCGAAAATCGGCCCACG
GCTGAACTCTGGGCCGAGCCGCACCACCCGTACACCTCGGCTTTGATCAATGCCGAGCCACACGGGGCGCCGGTTCCCGC
CCGTGCTACAGCCCCCGTACTTCTGGATGCCGCAGGACTCCGGGCCTGGTTCCCGATCAAAAAAGGAGTATTCAAACGGA
CGGTGGGGCACGTCAAAGCCGTGGACGGGGTCGATCTCCGGGTGCGGCAGGGGCATGCTGTGGGGATTGTCGGGGAAAGC
GGCTCGGGAAAAACGACGCTTGGCATGGCCCTGCTGCGTTTGGCCCACAGTCGCGGCCAGATTCTGTTCGACGGGCAGCG
GATCGATTCGCTGCGCTCCTCCCAACTCCGCTTTTTGCGCCGCCGACTGCAAATCATCTTTCAAGATCCCTTCGGCAGCC
TCAATCCACGGCTGGACACCACGGCCATCATTGCTGAAGGGCTTAAGGTCCATGAATCCCTCGGGGAATCGGACCGGATC
CAGCGCGTGGTCCAAACCATGGAGTTGGTCGGCCTCGACCCCGCCTGGCGCCACCGCTATCCGCATGAATTTTCCGGTGG
CCAACGTCAACGCCTCGCCATCGCCAGGGCGCTCATCCTCCGCCCCAGCCTTGTGGTCCTGGACGAGCCGACCTCTTCTC
TGGACCGCTCCATCCAGTCCCAGATCCTGGTCTTGCTGCGGCGCCTCCAAAAAGAACTCGGTTTGAGCTATCTGTTTATC
TCCCACGATCTCAAGCTGGTCCGCGCCCTGTGCCACGAAGTTCTGGTCATGCACGGCGGCAGTTGTGTGGAGCACGGGGC
CACGGAGGCCGTGCTGTCCGAGCCCCAAGCCCCAAGCACACGGCGGCTGGTCAGCGCTGCCTTCGGCGAAGCCGGCTGA

Protein sequence :
MTGVRRIVEIKNLCVWFPGDQEPAVNGVSLSLEAGQTLGLVGESGSGKSVTALALMGLLPPAARCTAERLELNATDILRA
NAKTVRALRGNSAAMVFQEPLSALNPLHTIERQITEPLQWHTGLSGANARKKAIELLEMVEIKEPAAKLTTYPHQLSGGQ
RQRVMIAMALSTSPRVLIADEPTTALDVTVQRQILDLLQRLQHNFDMALMLISHDLAMIKDVTADTAVMKQGRLVENRPT
AELWAEPHHPYTSALINAEPHGAPVPARATAPVLLDAAGLRAWFPIKKGVFKRTVGHVKAVDGVDLRVRQGHAVGIVGES
GSGKTTLGMALLRLAHSRGQILFDGQRIDSLRSSQLRFLRRRLQIIFQDPFGSLNPRLDTTAIIAEGLKVHESLGESDRI
QRVVQTMELVGLDPAWRHRYPHEFSGGQRQRLAIARALILRPSLVVLDEPTSSLDRSIQSQILVLLRRLQKELGLSYLFI
SHDLKLVRALCHEVLVMHGGSCVEHGATEAVLSEPQAPSTRRLVSAAFGEAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 9e-65 41
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 9e-65 41
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 9e-65 41
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 9e-65 41