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Name : Dret_1103 (Dret_1103) Accession : YP_003197969.1 Strain : Desulfohalobium retbaense DSM 5692 Genome accession: NC_013223 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1294039 - 1295754 bp Length : 1716 bp Strand : + Note : KEGG: gme:Gmet_1393 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase DNA sequence : ATGGCCAAGCAGACGACCACCGAGGCCCTGAAACAATGGGCCCAATTCACTGCAGAAGAAATCAGGGACATAGAAGAACT CCAGCGTCAGAAGCGGACCAGCTTTCTTGCGGCGGCGTTCGATAAAGATATCCTCAGGGACCAGGACTATCTGGAATTTC TTTCCCAACGTCTGTCCATGCCGTGCGCTGCGCCGGAACTTTTTGATATCGCTCAGGATATCTTTGAACTTGTGCCTTCA GAGTTGTGCCGCAAGTACGAGGCGGTCCCGTTCTTCCGCCACAACAACACCCTGTTCATCGCCACCGCCGACCCGGAAAA TCTCCTCGCCCTTGACGACATCCGTTTTGTGACCGGCATGGAACTCGCCGTGCACATCGCCACGCCCACGAGCATCGCTG TCAGTCTGGAGAACTATCTTAAAGGCGAAGAGTCTGGCGGGAATTTTGGCGATTTGGACGAGGCCCTGGCCGACATTGCC GAGTCCGATGTTGAAATTTCGCGCAAGAGCGAGGAATCCGCTTCGGAAGAACCTTCGGTGCTCGAGGCCGCTTCTCAGGC TCCTGTGGTCAAGATGGTCAACCTGATCATCATGGACGCCATCCGCAAGAAGGCGTCGGATATCCATATTGAACCCTATG AAGAACTTTTCCGAGTCCGTTTTCGTATCGACGGTGTCCTGCAGGAGGTCATGCGGCCGCCGATGCGCTTGCGCAATGCG ATCATCTCCCGTTTGAAAATCATGTCCCACATGGATATCGCCGAACGGCGACTGCCCCAGGATGGCCGGGTCAAGGTCCG GACCCCCGGAGGGTTGGAGGTCGAATTCCGGGTTTCGGTCTTGCCTCTTTTGTACGGGGAAAAGGTGGTCATGCGCCTGT TGGACAAGAGTTCGCTCAATCTTGACCTGCGGGATCTGGGGTTGGAAGACAGCGCCTTGGAGATCCTCCAGCGCGCCATC ATCAAACCGTACGGAATGATACTGGTTACCGGCCCAACAGGCAGCGGAAAGACGACCACCTTGTATTCGGCGATCATGGA ACTCAACAAGCAGGAAGTGAATATCGCCACTGCCGAAGACCCGGTGGAGTATAGTCTGGAAGGGGTCAACCAGGTCCAGG TCCGCGATGATATCGGCTTGACATTTGCCGGGGCCTTGCGCTCCTTTTTGCGTCAGGATCCGGACATTATTCTTGTGGGT GAGATCCGGGATCTGGAAACCGCCGAAATCGCCGTCAAAGCGGCTATGACCGGCCACCTTGTTCTTTCCACCCTGCACAC CAATGACGCGCCACGGACTTTGACGCGCCTGATGAACATGGGGGTCGAAGAATATCTGATCGCTTCGTCGGTCAATGCCA TTGTTGCCCAGCGTCTGGTGCGCAAACTCTGCCCCTTTTGCAAACAGGACACCGAGCTTTCGCAACCGGTCCTGGACGCC CTGGGCATTGATCCCGCCACCTGGGACGACAGCCAGGTCTGTGCCCCGCGTGGATGCCCGAAATGCAACAATACCGGGTA CAAGGGGCGCATCGGTCTGTACGAGGTCCTTGAAGTTACTGAAACTATGCAGGAATTGATCCTGCAGCGCGCCAGTGTCC CCCATATTCACGCCCTGGCCATAGAAGAGGGGATGTTGACCATGCGTCAAAGCGGTATCGAAAAAATCCGCCAGGGAATC ACTTCGGCCCAGGAAGTGCTCAAAGTAACGGCGTAA Protein sequence : MAKQTTTEALKQWAQFTAEEIRDIEELQRQKRTSFLAAAFDKDILRDQDYLEFLSQRLSMPCAAPELFDIAQDIFELVPS ELCRKYEAVPFFRHNNTLFIATADPENLLALDDIRFVTGMELAVHIATPTSIAVSLENYLKGEESGGNFGDLDEALADIA ESDVEISRKSEESASEEPSVLEAASQAPVVKMVNLIIMDAIRKKASDIHIEPYEELFRVRFRIDGVLQEVMRPPMRLRNA IISRLKIMSHMDIAERRLPQDGRVKVRTPGGLEVEFRVSVLPLLYGEKVVMRLLDKSSLNLDLRDLGLEDSALEILQRAI IKPYGMILVTGPTGSGKTTTLYSAIMELNKQEVNIATAEDPVEYSLEGVNQVQVRDDIGLTFAGALRSFLRQDPDIILVG EIRDLETAEIAVKAAMTGHLVLSTLHTNDAPRTLTRLMNMGVEEYLIASSVNAIVAQRLVRKLCPFCKQDTELSQPVLDA LGIDPATWDDSQVCAPRGCPKCNNTGYKGRIGLYEVLEVTETMQELILQRASVPHIHALAIEEGMLTMRQSGIEKIRQGI TSAQEVLKVTA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-86 | 47 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-86 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dret_1103 | YP_003197969.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 3e-106 | 49 |
| Dret_1103 | YP_003197969.1 | type IV-A pilus assembly ATPase PilB | VFG2426 | Protein | 2e-90 | 48 |
| Dret_1103 | YP_003197969.1 | type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 1e-89 | 48 |
| Dret_1103 | YP_003197969.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 8e-88 | 47 |
| Dret_1103 | YP_003197969.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 6e-96 | 46 |
| Dret_1103 | YP_003197969.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 9e-105 | 45 |
