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Name : RB2501_04995 (RB2501_04995) Accession : YP_003194006.1 Strain : Robiginitalea biformata HTCC2501 Genome accession: NC_013222 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 379094 - 380365 bp Length : 1272 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTGCCACTGCACACCTTGCGGGAAAATCCCGATTCAATCGCCCAAGCCCTCGGCAAACGGGGGATCGATGCCCAACC CATGATTCAGGAAGTACTGGAATTGGACAAGCAGCGCCGTACCCTGCAGACCCAATTGGACGCCACACTGGCGGAGGCCA ATACGCTCTCGCGGGAAATCGGGAATTTGTTTAAGGCGGGGAAATCCGAAGAAGCCCAGGAACTGAAGGCCCGTTCAGCG AAACTCAAGGAATCCTCCAAAGCCCTGACGGAATCCCTGAACGATGCAGCAGATACCCTGCAGCAAGCCCTCTACCAGGT ACCGAACGCTCCCCATACCTCCGTTCCGGCCGGAACGGACGAGGAGGACAACGAGGTGGTCTTCACATCCGGGGACCTGC CGCAGGCCGGAGGCAGTGCCCTGCCCCACTGGGAACTCGCCGCCCAATACGACCTGATCGATTTTGAGCTCGGGGTGAAA ATTACCGGGGCGGGATTCCCTGTTTACAAGGGTAAATGCGCCCGGCTCCAGCGCGCGCTGGTGAGCTTTTTCCTGGACCG CAACACGGAAGCGGGATACCAGGAAGTTCAGGTCCCCCACCTGGTCAATGAAGCCTCCGGGCTAGGTACGGGCCAGCTGC CCGACAAAGAGGGACAGATGTACGAACTCCGGGACGACAAATTGTTTTTGATCCCTACTGCAGAGGTCCCCGTTACCAAT ATGTTGCGGGACGAGTTGATGGACCTCGGCGACCTGCCGCTCTGCTATACGGCCTATACCCCCTGTTTCCGGAGGGAAGC CGGCAGCTATGGCGCGCATGTGCGGGGGCTCAACCGGCTGCACCAGTTTGACAAGGTGGAAATTGTGAGGGTGGAAGAAC CCGGGAATTCCTACGCGGCCCTGGAGCAAATGGTAGAGCACGTCAAAGGCCTGCTCGGCGAACTGGGGCTCCCGTATCGC ATCCTCCGGCTTTGCGGGGGTGATCTGGGCTTCACCTCCGCGCTGACCTACGATTTTGAGGTCTGGTCGGCGGCCCAGGA ACGCTGGCTCGAAGTGAGTTCCGTATCGAATTTTGAGGCCTTCCAGGCCAACCGCCTGAAACTGCGTTACCGGGACGAAA ACAACAAGCCGCAACTGGCCCACACCCTGAATGGAAGTGCCCTTGCACTGCCGCGGATCCTGGCGTGTATCCTGGAGGAT TACCAGGACGAATCGGGCATCCGCATCCCGGACGTGCTGGTGCCCTATACCGGTTTCGACCGGATCGAGTAG Protein sequence : MLPLHTLRENPDSIAQALGKRGIDAQPMIQEVLELDKQRRTLQTQLDATLAEANTLSREIGNLFKAGKSEEAQELKARSA KLKESSKALTESLNDAADTLQQALYQVPNAPHTSVPAGTDEEDNEVVFTSGDLPQAGGSALPHWELAAQYDLIDFELGVK ITGAGFPVYKGKCARLQRALVSFFLDRNTEAGYQEVQVPHLVNEASGLGTGQLPDKEGQMYELRDDKLFLIPTAEVPVTN MLRDELMDLGDLPLCYTAYTPCFRREAGSYGAHVRGLNRLHQFDKVEIVRVEEPGNSYAALEQMVEHVKGLLGELGLPYR ILRLCGGDLGFTSALTYDFEVWSAAQERWLEVSSVSNFEAFQANRLKLRYRDENNKPQLAHTLNGSALALPRILACILED YQDESGIRIPDVLVPYTGFDRIE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 7e-75 | 45 |
