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Name : lysS (RB2501_09280) Accession : YP_003194863.1 Strain : Robiginitalea biformata HTCC2501 Genome accession: NC_013222 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1319413 - 1321104 bp Length : 1692 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGCAGCTTTCGGAACAAGAAATCATCCGCCGGGAAAAACTCCGGCAACTTCGCGAACTCGGAATCGACCCTTACCCGGC CGAAAAATACCCTGTGGACACCCTCTCCTCCTCCGTACGGGAGAACTACGAGGAAGGGAAACACGTGGTCATGGCCGGCC GGCTGATGTCCCGCCGCATCCAGGGAAAGGCCTCTTTTGCAGAATTGCAGGACAGCGCCGGACGGATCCAGTTGTACTTC AACCGGGACGAAATCTGTGAAGGGGAGGATAAGTCGGCCTATAACGACATCTATAAAAAACTGCTCGACATCGGCGATAT CATCGGGATCGAGGGGGAGCTCTTTAAGACCCAGGTAGGGGAGAAAACGGTCCGGGTAAAGCGGTTTACGCTCCTGAGCA AGGCCCTGCGCCCCCTGCCCCTGCCCAAAAAGGATGCGGAGGGGAAGGTTTTCGACGAGTTCAACGACCCGGAACAGCGT TACCGCATGCGGTACGTGGACCTGGTGGTAAACCCGAACGTCCGGGAGACCTTTGTCAAGCGAACCAAAATCACCAACAG CATCCGCCGCTTCTTTAACGAGAAGGGCTACCTGGAGGTGGAAACGCCCATCCTGCAACCCATCCCGGGGGGTGCGGCGG CAAGGCCCTTCCAGACCCACCACAATGCGCTGGGCATTCCGCTCTACCTGCGTATCGCCAATGAACTCTATCTGAAAAGG CTCATTGTCGGGGGGTTTGACGGGGTATACGAATTTGCCAAGGACTTCCGGAACGAAGGGATGGACCGGACCCACAACCC GGAATTTACCGTCATGGAACTCTACGTGGCCTACAAGGATTACAACTGGATGATGGAGACCACCGAGCAACTCCTGGAAC GGGTAGCCCGGGAAGCCAATGGCAGCACCCGGGTCAGCGCCGGGGGGGAAACCATCGACTTCAAGGCGCCCTACCCAAGG GTCCCAATCCTGGATGCCATCAGGGAGCACACGGGGATCGACGTGGACGGCATGGACGAAGCCGCCCTGCGGGACGCGGC GGCCGGCCTGGGGATTGAGGTAGACGAGAGCATGGGCGTGGGCAAGCTGATCGACGAGATCTTCGGCGAATGCTGCGAAC ACCACTATGTTCAACCCACTTTTATCATCGACTACCCCAAAGAGATGAGCCCGCTTACCAAGGCCCACCGGTCCAAACCC GGGCTTACCGAGCGGTTCGAACTCCTGGTCAACGGGAAGGAGATCGCGAACGCCTACTCCGAGCTGAACGACCCGATCGA CCAAAGGGAGCGGTTTGAGGAGCAATTAAAGCTCTCCGAGAAAGGCGACGACGAAGCGATGTTCATCGACCGGGATTTCC TGCGGGCCCTCGAGTTCGGGATGCCCCCGACTTCCGGGATCGGGATCGGGATCGACCGCCTGGTGATGCTGCTCACGGAC AACTCCTCCATACAGGAAGTATTGTTCTTCCCCCAGATGAAACCGGAAAAGAAGCCGCTGGAGCTCAACGACGAGGAAAA AGCCATTGTGAATATCCTCCGGCCTGCCGCCGAAATGGATCTCGGCATCCTGAAGGAAAAGGCCGGCCTGAGCAACAAAA AATGGGATAAGGCTACCAAGTCCCTGGCTAAAAAGGGGTTGTTTGAGGTGTCCAAAACGGAAGACGGCCTCCTGGCCCGG TTTAAAGCTTGA Protein sequence : MQLSEQEIIRREKLRQLRELGIDPYPAEKYPVDTLSSSVRENYEEGKHVVMAGRLMSRRIQGKASFAELQDSAGRIQLYF NRDEICEGEDKSAYNDIYKKLLDIGDIIGIEGELFKTQVGEKTVRVKRFTLLSKALRPLPLPKKDAEGKVFDEFNDPEQR YRMRYVDLVVNPNVRETFVKRTKITNSIRRFFNEKGYLEVETPILQPIPGGAAARPFQTHHNALGIPLYLRIANELYLKR LIVGGFDGVYEFAKDFRNEGMDRTHNPEFTVMELYVAYKDYNWMMETTEQLLERVAREANGSTRVSAGGETIDFKAPYPR VPILDAIREHTGIDVDGMDEAALRDAAAGLGIEVDESMGVGKLIDEIFGECCEHHYVQPTFIIDYPKEMSPLTKAHRSKP GLTERFELLVNGKEIANAYSELNDPIDQRERFEEQLKLSEKGDDEAMFIDRDFLRALEFGMPPTSGIGIGIDRLVMLLTD NSSIQEVLFFPQMKPEKKPLELNDEEKAIVNILRPAAEMDLGILKEKAGLSNKKWDKATKSLAKKGLFEVSKTEDGLLAR FKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-99 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003194863.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-99 | 47 |
