Gene Information

Name : Dtox_2855 (Dtox_2855)
Accession : YP_003192243.1
Strain : Desulfotomaculum acetoxidans DSM 771
Genome accession: NC_013216
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 3017267 - 3018208 bp
Length : 942 bp
Strand : -
Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: aba:Acid345_3097 N

DNA sequence :
TTGAGATGTCTGGTAACCGGTGGCGCCGGTTTTATCGGCTCAAATCTAGTGCATACTTTAATAAATGAAGGATATAAAGT
ACGGGTCTTAGATAATTTTTCTACCGGAAAGTTCGAAAATATAGAGACTGTGATTAAAAATATTGATCTTATTGTGGGCG
ATTTGTGTAGAGAGGATGATGTGCGGAGGGCGGTAAAGGGGGTTGATATTGTCTTTCATCAGGCCGCTCTGCCATCTGTG
CCCAGATCGGTGGCGGATCCCTATACAACTAATAGAGTTAATATCGAAGGTACCTTAAATGTTTTTTTAGCAGCCCGTGA
CAGCGGAGTTAAAAGAGTGGTTTACGCATCCTCTTCCTCAGTTTACGGCAGTAATGAGAAACTGCCTAAGGAGGAAACTA
TGCTGACCAGACCCATGTCACCCTATGCGGCCTCAAAATTGGCTAAAGAGGTTTACGGGCGAATATTTTATGACTTGTAT
GGCCTGGAAACAGTGGGATTAAGGTACTTTAATGTTTTCGGACCGCGGCAAAACCCCGAGTCTCAGTATGCCGCGGTTAT
ACCGAAATTTATAACCGCTCTGCTAAAAGGAAAATCCCCTGATATATATGGAGACGGAGAGCAGTCCAGAGACTTTACCT
ATATTTCAGATGTGGTAAAAGCTAACCTTTTAGCTGCCAGGGGTTCAGGAGCTGCCGGGGAAGTTTTTAATATTGCCCGC
GGAACTAAGATTAATCTCAATGAATTGCTCAATCTGTTGAAAAAGATTACCGGCAGTAAGGCAGAAGCGGCGTATGCTGC
TTCGCGTCCCGGTGATGTGAAACACTCTTTGGCAGCAATTGAAAAGGCACAGTCAATTCTTGGGTACCAACCGGAGGTGA
GTCTGGAAGCCGGTCTGCGTCAAACCGTTGCCTGGTTTGGGGGGAGTTCCCTTGTTAATTAA

Protein sequence :
MRCLVTGGAGFIGSNLVHTLINEGYKVRVLDNFSTGKFENIETVIKNIDLIVGDLCREDDVRRAVKGVDIVFHQAALPSV
PRSVADPYTTNRVNIEGTLNVFLAARDSGVKRVVYASSSSVYGSNEKLPKEETMLTRPMSPYAASKLAKEVYGRIFYDLY
GLETVGLRYFNVFGPRQNPESQYAAVIPKFITALLKGKSPDIYGDGEQSRDFTYISDVVKANLLAARGSGAAGEVFNIAR
GTKINLNELLNLLKKITGSKAEAAYAASRPGDVKHSLAAIEKAQSILGYQPEVSLEAGLRQTVAWFGGSSLVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-47 46
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-47 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dtox_2855 YP_003192243.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 8e-48 46