Gene Information

Name : APA01_43500 (APA01_43500)
Accession : YP_003189516.1
Strain :
Genome accession: NC_013211
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 178369 - 179232 bp
Length : 864 bp
Strand : -
Note : Integrase core domain

DNA sequence : 
ATGACACGCTTCATTGAGGAGCACCGGCAGACATATGGTGTCGGGTCAATCTGCAGGGTTCTGTCGATTGCACCATCTGC
CTATTATGCAACTGTTGCCAGACAGAAAAATCCGTGTGTGCGCAGCCAGAAAGACAAAGAACTGTGCGATGACATCCGTA
GAGTGTGGAATAATAATTTCTGCGTCTATGGAGCGCGCAAGGTCTGGCATCAGCTCAGACGTGAAGGTCTGGATGTCGCC
CGCTGCACGGTAGAGCGGCTGATGCGCCGGATGGGGCTGAAAGGCGTCATTCGTGGCAAGGGGGTCAGAACCACACGGCC
TGATCCGCAACGTCCGTGTCCGCAGGATCTGGTGCAGCGCCAGTTTCATGCTCCTGCCCCCAACAGACTCTGGGTTTCGG
ATTTTACTTACGTTTCCACATGGCAGGGCTTTGTTTATGTGGCCTTCATCATTGATGTATTCGCACGGGTTATTGTGGGT
TGGCGCGTCTCCTCAACGGCTCATACCGACTTCGTGCTGGATGCTCTCGAGCAGGCTCTGTGCCAGAGGCGACCTGAGGG
AAAAGTGCCCCACCATTCCGACCGCGGCTGTCAATATGTGTCCATTCGCTACACGCAAAGACTGGCTGAAGCGGGGCTCG
TTGCTTCTGTCGGCAGTGTTGGGGATTCCTATGATAACGCCTTGGCAGAGACCATTAACGGACTTTACAAAACCGAACTC
ATCTATCGGCAGGGGCCATGGAAAAACAGGGAAGCTGTTGAACTGGCAACACTTAAATGGGTCGACTGGTTCAATAATCG
GCGGCTCCTGTCCTCCATTGGAAACATCCCGCCAGCAGAAGCTGAGGCACGCTTTTATGCATAA

Protein sequence : 
MTRFIEEHRQTYGVGSICRVLSIAPSAYYATVARQKNPCVRSQKDKELCDDIRRVWNNNFCVYGARKVWHQLRREGLDVA
RCTVERLMRRMGLKGVIRGKGVRTTRPDPQRPCPQDLVQRQFHAPAPNRLWVSDFTYVSTWQGFVYVAFIIDVFARVIVG
WRVSSTAHTDFVLDALEQALCQRRPEGKVPHHSDRGCQYVSIRYTQRLAEAGLVASVGSVGDSYDNALAETINGLYKTEL
IYRQGPWKNREAVELATLKWVDWFNNRRLLSSIGNIPPAEAEARFYA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-62 70
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 4e-62 69
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-69 68
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-77 63
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 5e-78 63
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-77 63
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-77 63
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-77 63
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-77 62
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-77 62
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-75 62
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-74 62
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-75 62
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-75 62
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-75 62
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-75 62
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-75 62
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-76 62
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-76 62
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-53 60
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 9e-73 60
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-58 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-45 44
CDC7B_2035 YP_005163476.1 transposase-like protein Not tested Not named Protein 9e-37 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APA01_43500 YP_003189516.1 transposase VFG1602 Protein 5e-73 60