Gene Information

Name : kdpE (APA01_09180)
Accession : YP_003187445.1
Strain : Acetobacter pasteurianus IFO 3283
Genome accession: NC_013209
Putative virulence/resistance : Virulence
Product : two component response regulator KdpE
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 953786 - 954517 bp
Length : 732 bp
Strand : +
Note : Winged helix family

DNA sequence : 
ATGAATGGAACAGCGGATATGTCTAAGGAAGATACCGATTTTTTCTCACCCAATGGGAAAACGGTGCTTCTGGTAGAAGA
TGACGGCACCATAGCCGAAGAAATTGCAGCTGAACTGACAGCCCGCGGTTTTAAGGTGCTGCACGAAGCCACGGGTAATG
CGGGGCTGGAAGCCGCCTTGCGGTTAGAAGCAGACATAATGGTGGTGGACCGCCTTTTGCCCGGTCTGGATGGTTTGAGC
GTTATAGAAACCATGCGGCAGCAGGGCATACGCATGCCTGTTCTAGTGCTTTCTGCCCTTTCTGCGGTGGATGATCGGGT
AACCGGCCTTAAGGCTGGGGGAGATGATTACCTCACCAAACCCTTCGCCATAGAAGAACTGGTGGCCCGTATAGAAGCCC
TGTTGCGCAGGCCGGATGATACCCGCAGCACCAAGCTGCATCTGGGCCCGATTGATATGGACCTGATAGAACGCCGCGTC
TGGCGGGATGGGCGGGAAATCGAGTTGCTACCGCGTGAATTCCGTTTGCTTGAATACCTTATGCGCAGGCCGGGGCAGGT
GCTCACACGGTCCATGTTGCTGGAAGATGTGTGGCAGTATCGGTTTATTCCGCGCACCAATCTGGTGGATGTTCATATCG
GCAAGCTGCGGCGGAAAATTGATGGGCCGGGAGAAGAACCGTTGATCGAGAGTATTCGCGGAACGGGATTCCGGCTGCGT
GTTCCTGACTGA

Protein sequence : 
MNGTADMSKEDTDFFSPNGKTVLLVEDDGTIAEEIAAELTARGFKVLHEATGNAGLEAALRLEADIMVVDRLLPGLDGLS
VIETMRQQGIRMPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDDTRSTKLHLGPIDMDLIERRV
WRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVWQYRFIPRTNLVDVHIGKLRRKIDGPGEEPLIESIRGTGFRLR
VPD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kdpE YP_003187445.1 two component response regulator KdpE BAC0125 Protein 3e-37 44
kdpE YP_003187445.1 two component response regulator KdpE BAC0083 Protein 3e-38 43
kdpE YP_003187445.1 two component response regulator KdpE BAC0638 Protein 2e-31 43
kdpE YP_003187445.1 two component response regulator KdpE HE999704.1.gene1528. Protein 1e-25 42
kdpE YP_003187445.1 two component response regulator KdpE BAC0347 Protein 8e-37 41
kdpE YP_003187445.1 two component response regulator KdpE BAC0197 Protein 6e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kdpE YP_003187445.1 two component response regulator KdpE VFG1389 Protein 5e-38 46
kdpE YP_003187445.1 two component response regulator KdpE VFG1390 Protein 7e-36 42
kdpE YP_003187445.1 two component response regulator KdpE VFG0596 Protein 2e-32 41
kdpE YP_003187445.1 two component response regulator KdpE VFG0473 Protein 3e-28 41