Gene Information

Name : Aaci_3004 (Aaci_3004)
Accession : YP_003186396.1
Strain :
Genome accession: NC_013206
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 46018 - 46461 bp
Length : 444 bp
Strand : -
Note : PFAM: DNA repair protein RadC; KEGG: dat:HRM2_20680 RadC2

DNA sequence : 
ATGTCATCCATCACCGTCGTCCGGGTAGAACTCGTCAAGGAACGATCACTTGAATATGAAGGTTCGCGGCTAATCCGGTG
CGCCGAAGACGCAGCAAACATCCTTCGAGGTTACATCGGCAACGCGGATCGTGAAATGTTCGTAGTGATGGTCTTATCAG
CCAAGCACATCGTCAACGCGATCAACACCGTTAGTCTCGGGATACTTGACTCCTCTATCGTGCATCCACGGGAAGTATTT
AAACCCGCGATTCTGAGCAATGCTGCATCGGTGATCGTGGGACACAATCATCCAAGCGGGGATCCCGAGCCAAGTCCAGA
AGACGTGGCAGTGACGCGCCGACTTGTGGATGCGGGAAAAATTCTAGGCATTGATGTTTTGGATCACATTGTCATCGGAG
ACGAAGGACGGTTCGTCAGTCTCAAGGCAAGAGAATTGCTCTGA

Protein sequence : 
MSSITVVRVELVKERSLEYEGSRLIRCAEDAANILRGYIGNADREMFVVMVLSAKHIVNAINTVSLGILDSSIVHPREVF
KPAILSNAASVIVGHNHPSGDPEPSPEDVAVTRRLVDAGKILGIDVLDHIVIGDEGRFVSLKARELL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SARLGA251_00320 YP_005754047.1 hypothetical protein Not tested Type-XI SCCmec Protein 4e-26 44
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-16 42
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-16 42
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-16 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Aaci_3004 YP_003186396.1 DNA repair protein RadC VFG1119 Protein 1e-16 42