Gene Information

Name : Aaci_1970 (Aaci_1970)
Accession : YP_003185371.1
Strain : Alicyclobacillus acidocaldarius DSM 446
Genome accession: NC_013205
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2018334 - 2019008 bp
Length : 675 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bbt:BBta_3078 two component transcriptional regulator

DNA sequence : 
ATGCGCATTCTCCTCGTTGAAGACGACCGGGGCCTGAGTGATGCACTCGCGGAACTCCTACGAGAGGAGTCGTTCCAGGT
CGATGTGGCGCATGACGGCGAGGAGGGTCTTTACCTCGCGGAGACCGCGGTGTACGACGCGCTCGTGGTCGACGTCATGC
TGCCCGGCCTGTCGGGTTACGATCTCGTCCGCACCTTGAGGGACAAGCGCGTGCACGTGCCCGTTCTATTCCTCACGGCC
CTGGGCGACGTCGATCACCGCGTTCAGGGGCTCAACGCCGGCGGGGATGACTACCTGCCGAAGCCGTTCGCCACCGAGGA
GTTTCTTGCCCGGCTGCGCGCCCTGTTGCGCCGCAACCGGGAATTGGGGACGGACATGACGCTGCGGTCAGGTCTCCTCG
TCTTGGATCCGCTCGCCCGACGTGCGGCGTTTGGAAATGAGCCCATCAAGCTCAGCGACAAGGAATTCGATCTGCTCGAA
TACCTGCTCAGCCACCGCGGACAGATTCTCATGCGCGAACGGATCTTCAATCGCGTATGGGGAATCGATTCCGACGTGAT
GGACACGACCGTGGACCTGTACGTCCATTACCTGCGAAAGAAGCTTCAGCCGTTCGGCTACGATACCGCCATTCGCACGG
TCCGCAACGTCGGATACATGTGGAGTGATCCGTGA

Protein sequence : 
MRILLVEDDRGLSDALAELLREESFQVDVAHDGEEGLYLAETAVYDALVVDVMLPGLSGYDLVRTLRDKRVHVPVLFLTA
LGDVDHRVQGLNAGGDDYLPKPFATEEFLARLRALLRRNRELGTDMTLRSGLLVLDPLARRAAFGNEPIKLSDKEFDLLE
YLLSHRGQILMRERIFNRVWGIDSDVMDTTVDLYVHYLRKKLQPFGYDTAIRTVRNVGYMWSDP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-24 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Aaci_1970 YP_003185371.1 winged helix family two component transcriptional regulator BAC0347 Protein 4e-29 45
Aaci_1970 YP_003185371.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-34 43
Aaci_1970 YP_003185371.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-32 42
Aaci_1970 YP_003185371.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-29 42
Aaci_1970 YP_003185371.1 winged helix family two component transcriptional regulator BAC0197 Protein 5e-24 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Aaci_1970 YP_003185371.1 winged helix family two component transcriptional regulator VFG0596 Protein 4e-25 42
Aaci_1970 YP_003185371.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-34 41