Gene Information

Name : Apar_0282 (Apar_0282)
Accession : YP_003179304.1
Strain : Atopobium parvulum DSM 20469
Genome accession: NC_013203
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 322719 - 323759 bp
Length : 1041 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: rle:RL3884 iron ABC transporter substrate binding protein

DNA sequence : 
ATGAAACATCACTGCACACATCACTCAACAGCTGCAAATCTGCGCCCGCATACAAACCTGCAGCCACACGCTCACCGTAA
CCCTCTCCTAACCCGCAGATCAGCGTTGTCTCTAATCGTCGCAAGTTCCACAATTGCCATCGCTTCGCTCTCTGCTTGCG
GGCAACGCAATTCTGCAACCAATTCAGGCTCTACATCAAACCAGAACTCATCGGCTCCCCTTGTCTTGACTACCTTCACC
GTCATCCAAGACATGGCTTCTCGCGTAGCAGGCGAGTTCTGCCAGGTAGAATCCATCACAAAGGCTGGCGCTGAAATTCA
TGACTACGAGCCCACTCCCGACGACCTCAAGCGAGCGCAGAAAGCCCAGCTTATCCTCAACAATGGCTTGGGGCTTGAGC
GTTGGTTTGAGCGCTTTGTCGACGAATCACCTGCCCAACGTGCTGACCTCAGTGAGGGTATTACCGCGATTCCTATTGCC
GAGGGCGATTTCCAGGGTCAGGCCAATCCACATGCGTGGATGTCGCCTGAAAACGGCAAGATCTATGTCGAGAATATCGT
CCGCGCGCTAAGCAGCCTTGTTCCTGACCATGCCAAGGACTTTGAAGCCAACGGCAACGCATACAAAAAAGAACTCGACA
GCATCTCTTCTCGACTAATCGAAGAGCTCAGTGCCCTACCGGAAAACCAGCGCACGCTTGTGACTTGCGAGGGTGCGTTC
TCATATCTATGTCGCGACACCACCATGAAGGAGCTCTACCTCTGGGCAGTTAACGCCGCTGATGAAGGTACTCCACAGCA
GATTGCCAAGGTCGTTGAAGCTGTAAAATCACAGCAAATTCCTGCGGTATTCTGTGAATCCACGGTAAACCCCAAGGCAA
TGCAGCAGGTAGCTGACGAGACAGGCGCAACCCTCAAAACTGACGAGAAAAACATCTTGTACGTTGACTCTCTTTCGGAA
GCCGGCGGTCCCGTTCCCACTTATCTTGATCTGCTTCAACACGATGCAGACGCAATCGTATCTGGCCTCATGGGAAGGTA
A

Protein sequence : 
MKHHCTHHSTAANLRPHTNLQPHAHRNPLLTRRSALSLIVASSTIAIASLSACGQRNSATNSGSTSNQNSSAPLVLTTFT
VIQDMASRVAGEFCQVESITKAGAEIHDYEPTPDDLKRAQKAQLILNNGLGLERWFERFVDESPAQRADLSEGITAIPIA
EGDFQGQANPHAWMSPENGKIYVENIVRALSSLVPDHAKDFEANGNAYKKELDSISSRLIEELSALPENQRTLVTCEGAF
SYLCRDTTMKELYLWAVNAADEGTPQQIAKVVEAVKSQQIPAVFCESTVNPKAMQQVADETGATLKTDEKNILYVDSLSE
AGGPVPTYLDLLQHDADAIVSGLMGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-70 55
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-70 55
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-70 55
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-70 55
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-70 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Apar_0282 YP_003179304.1 periplasmic solute binding protein BAC0349 Protein 6e-71 55
Apar_0282 YP_003179304.1 periplasmic solute binding protein BAC0439 Protein 4e-65 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Apar_0282 YP_003179304.1 periplasmic solute binding protein VFG0525 Protein 6e-71 55