Gene Information

Name : Apar_0281 (Apar_0281)
Accession : YP_003179303.1
Strain : Atopobium parvulum DSM 20469
Genome accession: NC_013203
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 321959 - 322711 bp
Length : 753 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmr:PMI1026 iron ABC transporter, ATP-binding protein

DNA sequence : 
ATGAATCTTTGCGTTTCACAACTTTGCGCCTGGTACGAGAAAAAAGACCGCGAGAAACCCATCATTCATGACGTGAATTT
CTCCCTCTCAACAGGAGATCTATGCGCACTTGTAGGCGTCAACGGTGCCGGTAAGTCTACGCTCTTCAAAGCGCTGATGG
ATACCATCGCATGCGAGGGCTCCATCACCTGGGGCAATCAGACTCTTTCACAAGCACGTAAGCTGGGCAAAGTCAGCTAC
GTTCCTCAAACGGAAGCAATTGATGCGACCTTTCCCCTGCTCGTAAAAGACGTTGTCATGCAGGGTAGATATGTTCATCA
AGGTTGGATGCGCATAGCTTCCGCCCAGGACAAGGAGCTGGTTGCTCAAGCACTAGAACGCGTTAACCTGGCCGACCTTA
TGAATTGTCCGCTTGCCCAGCTTTCTGGTGGACAAAGAAAGCGCGTGTTTGTGGCACGCGGAATCGCACAAGCCGCTGAA
CTGGTGTTTCTCGATGAACCGTTTGCAGGAGTAGACGCTCGTTCTGAAGCCATCATCACTGAACAGCTCAATAATCTCAG
TAAAGAAGGCAAAACATTGCTCGTTTCAATTCACGACATTAACTTAGCTCAGCAAAAATTCCCGCTTTGCCTGGTCATCA
ACAGGACTATCACCGCGCAGGGACCTTCAAAAGAAATTCTTTCCGGAGACGCGCTCCTACAGAACCTCGGAATTTCTGAG
GACACCCATATTGAGGAGGTACTCCATGCCTGA

Protein sequence : 
MNLCVSQLCAWYEKKDREKPIIHDVNFSLSTGDLCALVGVNGAGKSTLFKALMDTIACEGSITWGNQTLSQARKLGKVSY
VPQTEAIDATFPLLVKDVVMQGRYVHQGWMRIASAQDKELVAQALERVNLADLMNCPLAQLSGGQRKRVFVARGIAQAAE
LVFLDEPFAGVDARSEAIITEQLNNLSKEGKTLLVSIHDINLAQQKFPLCLVINRTITAQGPSKEILSGDALLQNLGISE
DTHIEEVLHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 5e-41 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 5e-41 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-41 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-41 44
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-41 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Apar_0281 YP_003179303.1 ABC transporter-like protein BAC0350 Protein 1e-41 44
Apar_0281 YP_003179303.1 ABC transporter-like protein BAC0440 Protein 6e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Apar_0281 YP_003179303.1 ABC transporter-like protein VFG0526 Protein 1e-41 44