Gene Information

Name : Apar_0280 (Apar_0280)
Accession : YP_003179302.1
Strain : Atopobium parvulum DSM 20469
Genome accession: NC_013203
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 321130 - 321966 bp
Length : 837 bp
Strand : -
Note : PFAM: ABC-3 protein; transport system permease protein; KEGG: rpb:RPB_3405 hypothetical protein

DNA sequence : 
ATGCCTGAGGTTGATATTCTCCAATATGCATTCATGCAGCGAGCCCTCATCACTGGTATTGCAACTGCAATAGTCTGCGG
ACTTTTGAGTTGCTGGATTACCCACATGGGTTGGTCGCTCATGGGCGATGCTATCTCCCACTCTATTCTTCCAGGCGTAG
TTATTGCCCATTTACTCGGGTTTCCCTATCTGGTGGGAGCGCTAGTGTTTGCCCTTATTACCGTGGTGTTGGTCGGACAG
GTTAAAAAGAGTCAAATTGTACGTGCTGATACAGCAATCGGTATCGTATTTACAACGTTTTTTGCGCTAGGAACAGTTCT
CATATCAAAAGTTCCAAGCCAAATTAACCTGTCACACATACTGTTTGGAAATCTTTTGGGTGTCACCACGCCCGACATGC
TGCAAGTTCTTTGCATTGGCCTTCCTATTGCAATCCTACTCATACTTAAAAACAAGGATCTGACCTTGCTTTCATTTGAT
CAAACACAGGTTCAAGCAATCGGTCTCTCCATCAAAACACTCACCTCATTCTTACTTGTTGCCCTAGCCTTAGCAATTGT
CATATCCCTCCAAGCAGTTGGTGTTATTTTGTCCGTTTCACTCCTTATTGTTCCGGGCGCCTGCGCAAGACTCCTCACTA
ACCAAATGAAGCATATGCTCTGGATTTCTCCACTTATTGCCACACTCAGCATTTTGATTGGAATAACTGGCAGTTATTAC
TTAGATGCCTCTTCTGGAGGCATGATTGGACTCACCCTTGGTGTGATTTTCTGTATCATTTTTATACTTAAAAGTTTACC
TAGACTTACTTTTGGGCATATACTAAACAAGAACTAA

Protein sequence : 
MPEVDILQYAFMQRALITGIATAIVCGLLSCWITHMGWSLMGDAISHSILPGVVIAHLLGFPYLVGALVFALITVVLVGQ
VKKSQIVRADTAIGIVFTTFFALGTVLISKVPSQINLSHILFGNLLGVTTPDMLQVLCIGLPIAILLILKNKDLTLLSFD
QTQVQAIGLSIKTLTSFLLVALALAIVISLQAVGVILSVSLLIVPGACARLLTNQMKHMLWISPLIATLSILIGITGSYY
LDASSGGMIGLTLGVIFCIIFILKSLPRLTFGHILNKN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-26 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-26 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-26 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-27 41
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Apar_0280 YP_003179302.1 ABC-3 protein BAC0352 Protein 1e-26 41
Apar_0280 YP_003179302.1 ABC-3 protein BAC0442 Protein 3e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Apar_0280 YP_003179302.1 ABC-3 protein VFG0528 Protein 1e-26 41