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Name : Apar_1336 (Apar_1336) Accession : YP_003180351.1 Strain : Atopobium parvulum DSM 20469 Genome accession: NC_013203 Putative virulence/resistance : Unknown Product : alpha amylase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0366 EC number : - Position : 1502713 - 1504410 bp Length : 1698 bp Strand : + Note : PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: stt:t4488 trehalose-6-phosphate hydrolase DNA sequence : ATGTCAGGGCAATCTTCACGAGTAACAAGCAATCCCAAGGGCGCTTATACGCGCGCTGAGTTTCTCGGCACCAAGGTTGT GTATCAAATCTACGTCCGCTCCTTTAACGATTCAAACGGAGACGGCATCGGAGACCTTCCCGGCATCACGCAACGTCTTG ACTACCTGCAAAAACTCGGCGTTGACTATCTGTGGCTTACTCCGTTTTTTGTTTCACCCCAACATGACAATGGCTACGAC GTTGCAGATTACCGCAACGTCGAGCCTCTCTTTGGCACCATGGCTGACTTCAACGAACTTTCAGCCGAAGCAAAAAAGCA CGGTATCAAGCTGATGCTCGACATGGTCTTTAACCACACATCAACCGAGCATCCATGGTTTCAGCGGGCACTTAGCGGCG ATCCTCAATACCTTGCCTACTATACCTTTGTCGATGGCAACCCCAACACGCCGCCAACAAACTGGAAGTCCAAGTTTGGC GGAAGCGCATGGGAGTGGGTTCCCACACTTCATAAGTGGTATCTCCATCTCTTTGACGCCTCACAGGCGGATCTCAACTG GGACAACCCAAGCGTCCGAGCCGAGCTTGCCGACATAGTGAGTTTCTGGCACAACAAAGGCGTTGATGGTTTTCGCTTTG ACGTTGTTAATCTCATTTCCAAGCCAGATGTCTTTGAGGACGACGCCATAGGAGACGGCAGGCGCTTTTACACCGACGGG CCACATGTCCACGAATACCTGCAGGAACTCGTCAAGCGCGGTGGTATCGACGGGCTGATGACCGTCGGTGAAATGAGCTC CACCTCAATTGAAAACTGCATACGCTATTCCAATCCGGCTGACCATGAGCTTGCCATGACCTTCTCGTTTCATCACCTTA AGGTTGATTACCTCAACGGAGACAAGTGGTCGCTCAAAGAGCCGGATATCGGCAAGCTTCGTGAGCTGTTGAAATCGTGG CAAGAACAGATTACGGCAGGTGGAGGCTGGAATGCGCTGTTTTGGGCCAATCACGATCAGCCTCGTCCGAATTCTCGCTT TGGCGATACCGAGCACTACTGGGAAATGTCCAGCAAACTGCTTGCCGTCACCGCACATCTTCTGCGCGGAACTCCCTATA TTTACCAGGGAGAAGAGCTGGGTATGACCAATGCGGGATTTACCAATATCACACAGTATCGAGACGTGGAGTCCCTCAAT TACTTTAAGATCCTTCAGGATCGGGGCTGCTCCCCCAAAGAAGCGCTCCATATCATCTCCGAGCGCTCCCGCGACAATGG GCGCACACCCGTTCAATGGGATGCCTCAAAAACCGCAGGTTTCACTTCCGGTACACCGTGGATTGGCATTCCCGACAACC ACACCATCATCAATGCTGCTGCAGAAGTTGGCGATCCTGACTCGATATTCTCCTTCTATCAAAAGCTCATTGTTCTTCGA AAAACTCATCCCGTTATCAGCGAGGGAGATGTTTGCTTTATCGACTCCGCTGGCGAGAAGGTCATTGCCTACGAGCGTAC CTTGGATAGCTGTTGCGTGCGCGTCTTTGCAAACTTCTCTGACCAAAAGGTTCGCTGTGCGCCGAAAGCTGAAATCGATG GGTCTGACGTCCTTATTGGTAACTATCCCAACACCGTAACCGATGCAGATGCGCTCATACTTCGTCCTTTTGAGGCACGA GCCTTTATCTGGGAATGA Protein sequence : MSGQSSRVTSNPKGAYTRAEFLGTKVVYQIYVRSFNDSNGDGIGDLPGITQRLDYLQKLGVDYLWLTPFFVSPQHDNGYD VADYRNVEPLFGTMADFNELSAEAKKHGIKLMLDMVFNHTSTEHPWFQRALSGDPQYLAYYTFVDGNPNTPPTNWKSKFG GSAWEWVPTLHKWYLHLFDASQADLNWDNPSVRAELADIVSFWHNKGVDGFRFDVVNLISKPDVFEDDAIGDGRRFYTDG PHVHEYLQELVKRGGIDGLMTVGEMSSTSIENCIRYSNPADHELAMTFSFHHLKVDYLNGDKWSLKEPDIGKLRELLKSW QEQITAGGGWNALFWANHDQPRPNSRFGDTEHYWEMSSKLLAVTAHLLRGTPYIYQGEELGMTNAGFTNITQYRDVESLN YFKILQDRGCSPKEALHIISERSRDNGRTPVQWDASKTAGFTSGTPWIGIPDNHTIINAAAEVGDPDSIFSFYQKLIVLR KTHPVISEGDVCFIDSAGEKVIAYERTLDSCCVRVFANFSDQKVRCAPKAEIDGSDVLIGNYPNTVTDADALILRPFEAR AFIWE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| malL | YP_251987.1 | oligosaccharide alpha-1,6-glucosidase | Not tested | SCCmec | Protein | 5e-114 | 45 |
