Gene Information

Name : lolD (LC705_00972)
Accession : YP_003173662.1
Strain : Lactobacillus rhamnosus Lc 705
Genome accession: NC_013199
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 962734 - 963399 bp
Length : 666 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAATTTTAACGGCACGCCAATTGACCAAGCAATATGCTGGTGAAGCGCATCCGGCACTGGATCATGCCAATTTGAC
GATTGAACAAGGCGAGTTTGTTGCCATAGTGGGGCCGAGTGGTTCAGGAAAGTCAACCTTGCTTCATTTGTTAGGCGGGA
TTGATCAGCCAACCAGTGGGGAGGTCCGGTTATATGACACGGATATCTACGCACTGAATCAAACGCAACTGGCGATTTTT
CGACGTCGGCAAGTCGGCTTGATTTATCAGTTTTACAACTTGATTCCGAACTTGACGGTGGCTGAGAATATCACATTGCC
AGCGGATTTGGATGGACGGTCAATTAAAGAAGCCGTTTTGACGGAGATGTTAACAACCTTGGGCCTTGTCGAAAAGGCAT
CTGCTTTGCCTAATCAGCTTTCAGGCGGGCAGCAGCAACGGGTGGCAATTGGACGGGCGTTAATCAATCATCCCGCGGTT
ATTTTGGCCGATGAACCTACAGGCAATCTTGATCGCCGGAATTCACAGGATGTGATGACGCTACTACGACAAGCCAATAT
TAAGCAGGGGCAGACACTGGTCGTGATCACCCATGATCCAGACATTGCCAGTCAAGCTGATCGTATTGTCCGCATTGACG
ATGGGGTCGTGAGCGGGGGGCGGTGA

Protein sequence : 
MAILTARQLTKQYAGEAHPALDHANLTIEQGEFVAIVGPSGSGKSTLLHLLGGIDQPTSGEVRLYDTDIYALNQTQLAIF
RRRQVGLIYQFYNLIPNLTVAENITLPADLDGRSIKEAVLTEMLTTLGLVEKASALPNQLSGGQQQRVAIGRALINHPAV
ILADEPTGNLDRRNSQDVMTLLRQANIKQGQTLVVITHDPDIASQADRIVRIDDGVVSGGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-34 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-35 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_003173662.1 ABC transporter ATPase CP001581.1.gene598.p Protein 1e-54 55
lolD YP_003173662.1 ABC transporter ATPase CP001581.1.gene798.p Protein 1e-50 51
lolD YP_003173662.1 ABC transporter ATPase NC_008702.1.4606598. Protein 5e-35 48
lolD YP_003173662.1 ABC transporter ATPase NC_012469.1.7686878. Protein 8e-38 42