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Name : clpC (LC705_02503) Accession : YP_003175193.1 Strain : Lactobacillus rhamnosus Lc 705 Genome accession: NC_013199 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2540749 - 2543256 bp Length : 2508 bp Strand : - Note : - DNA sequence : ATGGACAACTTATTTACCCCTAGTGCTAAAAATGTGTTGCTTTTAGCCCAGGAACAAGCGAAGTACTTCCATCATCATGC TGTTGGCACGGAACACTTGCTTATGGCTTTGGTTATGGAAAAGGATGGTATCGCTGGTAAGACGCTGCGTCAGTTAGGGG TCACAGAAAATGATGTCCATGACGAGATCGAGCGCTTCACAGGATATGGAACTGTTGATGCCGCCAGTCAAGCTAGCGAT AGTTATTTGCCATACTCACCAAAAGGCAAGGAAATTCTGGCATTTGCCGGGGACGAAGCAAAACGCTTAGGGGCGTTAAA AATCGGCACCGAGCATATTCTGCTGGGACTATTGCGAGAAGACGATATTTTAGCTGCGCGGATTTTACAAAACTTAGGGC TCAGTCTCTCGAAGACGCGTCAGATGGTCTTCAAGAAAATGGGCATTGCGGATACGGCGGCAAAGCGGCGGCCAATGGCA CGTGGCGGCGCTCGCCAAGACGGTCAGGGGACACCAACGCTTGATGGCCTCGCCCGTGATCTAACCCAGATGGCGCGCGA AAATCGGATGGATCCGGTGGTTGGTCGCGACAAAGAAGTTCGGCGCTTGATTCAAATCTTGGCTCGGCGCACTAAGAACA ACCCGGTCTTGATTGGTGAACCCGGTGTCGGCAAAACGGCCATTGCAGAAGGCTTCGCTGAAAAAATTGTGGCTGGAAAA GTGCCGGATGATATGCTGAACAAACGCTTGATGATGCTTGACATGGGTTCGTTGGTTGCAGGCACTAAGTATCGTGGTGA GTTTGAAGATCGGCTGAAGAAAATTATTGATGAGATTTATAAAGATGGCAATGTCATTTTATTCATCGATGAATTGCACA CATTGATCGGTGCTGGCGGTGCTGAAGGGGCAATTGACGCTTCAAATATCCTGAAACCGGCATTGGCACGTGGCGAGCTT CAGCTAATCGGCGCCACGACTTTAGATGAATATCAAAAGTACATTGAAAAAGATGCGGCCTTGGAGCGGCGGTTTGCAAC AATTCAAGTTGACGAACCGACTGAGGAAGAAGCCGAACAGATTCTGAAAGGTTTGCGTCCGCGTTACGAAGCACACCATG GCGTTACGATTACCGATGAAGCGCTGCATGAAGCGGTTGTGTTGTCGTCACGTTACATTACAACGCGTTTTCTTCCGGAT AAGGCTATTGACTTGGTCGATGAAAGTGCGGCTAAAGTTCGCCTTGATAAAGCTAACGTGGAGACCAAAGCTGATAAACT TCAGGATGAATTAGCTAAACTGGTTGCCGACAAAGAAGATGCAATTGATCATCAAGACTTCGAAACGGCTGCTACAATCC GGACTAAAGAAGCGGGCGTCAAGGCTAAACTTGCCGATACGCCTGAACCGGTGAATGAAAGTGGTGTTCGTACCGATATC AAGGTCACGGGCGCAGACGTTGCCGAAGTTGTATCGCAATGGACCGGCGTGCCGGTCACGCAACTGCAGAAAAAGGAATC TGAACGGTTGGTTAATCTCGAGAAGATTCTGCATCAGCGAGTTGTTGGCCAGGATGAAGCCGTTTCAGCAGTTGCACGGG CAATTCGGCGTGCTCGTTCCGGGTTGAAGGATCCGACCAGACCGATTGGCTCCTTCATGTTCTTGGGACCAACCGGCGTC GGCAAAACCGAATTAGCTAAAGCGTTGGCAGAAGCGATGTTTGGTTCCGAGGACGCCATGATTCGGGTCGATATGTCCGA GTATATGGAGAAATTCAGTACGAGCCGGTTAATCGGCGCAGCGCCAGGCTATGTCGGTTATGACGAAGGCGGTCAATTGA CGGAAAAGGTTCGCAACAAGCCATATTCGGTCGTTTTACTCGATGAAGTTGAAAAGGCGCATCCTGATGTCTTCAACATT TTGTTACAAGTCTTGGATGATGGCTATTTAACCGATGCTAAGGGTCGGCGGGTCGATTTTCGGAATACCATTTTGATTAT GACCAGCAATATCGGAGCAACTGCCATTCGCGATGATAAGACAGTTGGATTTGGTGCAAAAGATCCAACAGCCGACTTCA ATGCCATGAAGAGTCGGATGTTGGCTGAACTGAAAAAGAGCTTCCGTCCAGAATTTCTTAATCGAATTGACGAAACTGTT GTCTTCCATAGCTTGAACAAGGCTGAGTTGCATGAGATCGTCAAGATTATGACCAAAACCGTGCTTAGTCGTATCAAAGA TCAAGGAATTGACGTTAAAATTACGCCAGCCGGGATTGATGCGATTGCCGCGGCTGGGTTTGATCCTGAATATGGTGCGC GCCCGATCCGCCGTGCCTTGCAAACGGATGTTGAAGACCAACTCAGTGAGCTATTGCTGACGGGTCAGGCTAAAACCGGT GATTTGATTCAAATCGGCGCTAAAAAAGGCAAGCTGACGTTTACAGTCAAGGAAAACAAAGGTAAGCATAAAGAAAACGG CGCTTCTAAAGAACCTGTCAAGGCATGA Protein sequence : MDNLFTPSAKNVLLLAQEQAKYFHHHAVGTEHLLMALVMEKDGIAGKTLRQLGVTENDVHDEIERFTGYGTVDAASQASD SYLPYSPKGKEILAFAGDEAKRLGALKIGTEHILLGLLREDDILAARILQNLGLSLSKTRQMVFKKMGIADTAAKRRPMA RGGARQDGQGTPTLDGLARDLTQMARENRMDPVVGRDKEVRRLIQILARRTKNNPVLIGEPGVGKTAIAEGFAEKIVAGK VPDDMLNKRLMMLDMGSLVAGTKYRGEFEDRLKKIIDEIYKDGNVILFIDELHTLIGAGGAEGAIDASNILKPALARGEL QLIGATTLDEYQKYIEKDAALERRFATIQVDEPTEEEAEQILKGLRPRYEAHHGVTITDEALHEAVVLSSRYITTRFLPD KAIDLVDESAAKVRLDKANVETKADKLQDELAKLVADKEDAIDHQDFETAATIRTKEAGVKAKLADTPEPVNESGVRTDI KVTGADVAEVVSQWTGVPVTQLQKKESERLVNLEKILHQRVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGV GKTELAKALAEAMFGSEDAMIRVDMSEYMEKFSTSRLIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDEVEKAHPDVFNI LLQVLDDGYLTDAKGRRVDFRNTILIMTSNIGATAIRDDKTVGFGAKDPTADFNAMKSRMLAELKKSFRPEFLNRIDETV VFHSLNKAELHEIVKIMTKTVLSRIKDQGIDVKITPAGIDAIAAAGFDPEYGARPIRRALQTDVEDQLSELLLTGQAKTG DLIQIGAKKGKLTFTVKENKGKHKENGASKEPVKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003175193.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 61 |
| clpC | YP_003175193.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 1e-142 | 48 |
