Gene Information

Name : mtsC (LC705_02419)
Accession : YP_003175109.1
Strain : Lactobacillus rhamnosus Lc 705
Genome accession: NC_013199
Putative virulence/resistance : Virulence
Product : iron ABC transporter membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2461108 - 2462001 bp
Length : 894 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTTCATTAGCTGAATTTTTCACCGCGTTAGGAAAATATGATTTCCTCCAAAGTGCGTTAATTACTGCCATCATGGT
AGGGATCATGTCCGGTTTGATTGGTAGCTTCATTATTTTGCGCGGCATGTCGTTGATGGGGGATGCAATTTCCCATGCGG
TGCTTCCGGGCGTTGCCGTTGCTTATATGCTGGGTGTCAACGTCATGATTGGGGCTTCGGTGTTTGGCATTATCGCCGCG
CTGTTGATCGGTTTTGTTGCGGCAAATAGTAAGATCAAAACCGATACCTCCATCGGCGTGGTGTTCAGTGCGTTTTATGC
GCTCGGATTCATTTTGATTTCGATGGCAGAAAGCGCTACGAACTTGCATCATATTCTGTTTGGTAATATTTTGGCGGTCA
GCGATAGTGATATTATGACCACCGCGGTTGTGTTAGGGATTGTCATTTTATTCGTGGTGTTGTTCTATAAGGAATTGTTG
ATCACATCGTTTGATAATACCTTTGCTAAAACTTATGGGTTGAATACCACTGCGATTCATTACGCGTTGATGCTGGTTTT
AACCTTGGTAACTGTTTCGGCCTTGCAGACGGTGGGGATCATTTTGGTCGTTGCTATGCTGATCACGCCTGCTGCCACTG
CTTTCTTATGGACGGATCGGCTTGAAACCATGCTCGTGATGGCAGCAAGCGTCGGGGTCATTTCGTCTATCACCGGGTTG
TATTTCAGCTTCACCTTTAACTGGGCATCCGGTCCGGCAATTGTGCTCGTAGCGGCGGTATTGTTCGCCATCTCGTTCGT
CTTTTCACCAAAACAGGCATTCTTTAGTTTCAGTAAGCGTCAGCGGACCAAAACAGCCGCGACGACTCAAACCGCGGAGG
AAGTTATTCGATGA

Protein sequence : 
MSSLAEFFTALGKYDFLQSALITAIMVGIMSGLIGSFIILRGMSLMGDAISHAVLPGVAVAYMLGVNVMIGASVFGIIAA
LLIGFVAANSKIKTDTSIGVVFSAFYALGFILISMAESATNLHHILFGNILAVSDSDIMTTAVVLGIVILFVVLFYKELL
ITSFDNTFAKTYGLNTTAIHYALMLVLTLVTVSALQTVGIILVVAMLITPAATAFLWTDRLETMLVMAASVGVISSITGL
YFSFTFNWASGPAIVLVAAVLFAISFVFSPKQAFFSFSKRQRTKTAATTQTAEEVIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 6e-57 60
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 8e-57 60
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-40 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-40 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-40 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-40 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-40 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mtsC YP_003175109.1 iron ABC transporter membrane protein BAC0352 Protein 1e-40 43
mtsC YP_003175109.1 iron ABC transporter membrane protein BAC0442 Protein 1e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mtsC YP_003175109.1 iron ABC transporter membrane protein VFG0528 Protein 1e-40 43