Gene Information

Name : ABC-NDB (LC705_01929)
Accession : YP_003174619.1
Strain : Lactobacillus rhamnosus Lc 705
Genome accession: NC_013199
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1944860 - 1945549 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
GTGGTAAAAAACCTAAAAAAGGAAATTGAGTTGGCACAGGGAAATGTGTTAGAGGTTTTAAGTGATATTTCTTTTGAGAT
AAAGCAAGGAGAATTTGTATCGATCGTGGGTCCTTCAGGTTCGGGAAAATCAACTTTACTGTATTGTATATCTAGTTTAT
TGCCACCTACTGAAGGGGAAGTGCTAATTAAGGGAAAATCTCCTTATGAATGGAGTGCTTCAAAATTAGCCAAGTTTCGA
CGGCAAGAAATTGGCTTTATTTTTCAGGATTATCAATTGATACCATCGCTATCAGCCTTTGATAACTTGATGTTACCAGG
TATCTTGAATGGACGAAAAATTGAAAAATCCTCCGTGGAAGCAATCGCAACACGGCTTGAGTTGAAAGTAGAACTCAATC
AGCCAATTGACGCACTTTCAGGTGGTGAACAGCAACGAGTGGCTATTGCACGAACTATTTTAGCTAACCCGGAGATTATT
TTTTTAGATGAACCAACCAGCGCTTTGGATACCCATTCACGTAAGTTGACAATGGGTTTATTTCATGAATTGGTGGGTCA
AGGAAAAACGATTATTATGGTAACTCATGATTTGGAACTCGCTGAGAAAACTTCCCGAACAATCGTGATGAGAGATGGAA
AAATTGAAAGAGATATTGAATTGACACAGTTTAATACTGTTACAATATAA

Protein sequence : 
MVKNLKKEIELAQGNVLEVLSDISFEIKQGEFVSIVGPSGSGKSTLLYCISSLLPPTEGEVLIKGKSPYEWSASKLAKFR
RQEIGFIFQDYQLIPSLSAFDNLMLPGILNGRKIEKSSVEAIATRLELKVELNQPIDALSGGEQQRVAIARTILANPEII
FLDEPTSALDTHSRKLTMGLFHELVGQGKTIIMVTHDLELAEKTSRTIVMRDGKIERDIELTQFNTVTI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-40 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-40 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-40 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-38 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ABC-NDB YP_003174619.1 ABC transporter ATPase NC_012469.1.7686878. Protein 5e-35 47
ABC-NDB YP_003174619.1 ABC transporter ATPase CP001581.1.gene598.p Protein 2e-38 44
ABC-NDB YP_003174619.1 ABC transporter ATPase CP001581.1.gene798.p Protein 1e-33 43