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Name : clpC (LGG_02499) Accession : YP_003172245.1 Strain : Lactobacillus rhamnosus GG Genome accession: NC_013198 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2561081 - 2563588 bp Length : 2508 bp Strand : - Note : - DNA sequence : ATGGACAACTTATTTACCCCTAGTGCTAAAAATGTGTTGCTTTTAGCCCAGGAACAAGCGAAGTACTTCCATCATCATGC TGTTGGCACGGAACACTTGCTTATGGCTTTGGTTATGGAAAAGGATGGTATCGCTGGTAAGACGCTGCGTCAGTTAGGGG TCACAGAAAATGATGTCCATGACGAGATCGAGCGCTTCACAGGATATGGAACTGTTGATGCCGCCAGTCAAGCTAGCGAT AGTTATTTGCCATACTCACCAAAAGGCAAGGAAATTCTGGCATTTGCCGGGGACGAAGCAAAACGCTTAGGGGCGTTAAA AATCGGCACCGAGCATATTCTGCTGGGACTATTGCGAGAAGACGATATTTTAGCTGCGCGGATTTTACAAAACTTAGGGC TCAGTCTCTCGAAGACGCGTCAGATGGTCTTCAAGAAAATGGGCATCGCGGATACGGCGGCAAAGCGGCGGCCAATGGCA CGTGGCGGCGCTCGCCAAGACGGTCAGGGGACACCAACGCTTGATGGCCTCGCCCGTGATCTAACCCAGATGGCGCGCGA AAATCGGATGGATCCGGTGGTTGGTCGCGACAAAGAAGTTCGGCGCTTGATTCAAATCTTGGCGCGGCGCACTAAGAACA ACCCGGTCTTGATTGGTGAACCCGGTGTCGGCAAAACGGCCATTGCAGAAGGCTTCGCTGAAAAGATTGTGGCTGGAAAA GTGCCGGATGATATGCTGAACAAACGCTTGATGATGCTTGACATGGGTTCGTTGGTTGCAGGCACTAAGTATCGTGGTGA GTTTGAGGATCGGCTGAAGAAAATTATTGATGAGATTTATAAAGATGGCAATGTCATTTTATTCATTGATGAATTGCATA CATTGATCGGTGCTGGCGGTGCTGAAGGGGCGATTGACGCTTCAAATATTCTGAAACCGGCATTGGCACGTGGCGAGCTT CAGCTAATCGGCGCCACGACTTTAGACGAATATCAAAAGTACATTGAAAAAGATGCGGCCTTGGAGCGGCGGTTTGCAAC AATTCAAGTTGACGAACCGACTGAGGAAGAAGCCGAACAGATTCTGAAAGGCTTGCGTCCGCGTTACGAAGCACACCATG GCGTTACGATTACTGATGAAGCGCTGCATGAAGCGGTTGTGTTGTCGTCACGTTACATTACAACGCGTTTTCTTCCGGAT AAGGCTATTGACTTGGTCGATGAAAGTGCGGCTAAAGTTCGCCTTGATAAAGCTAACGTGGAGACCAAAGCTGATAAACT TCAGGATGAATTAGCTAAACTGGTTGCCGACAAAGAAGATGCAATTGATCATCAAGACTTCGAAACGGCTGCTACAATCC GGACTAAAGAAGCGGGCGTCAAGGCTAAACTTGCCGATACGCCTGAACCGGTGAATGAAAGTGGTGTTCGTACCGATATC AAGGTCACGGGCGCAGACGTTGCCGAAGTTGTATCGCAATGGACCGGCGTACCGGTCACGCAACTGCAGAAAAAGGAATC CGAACGGTTGGTTAATCTCGAGAAGATTCTGCATCAGCGAGTTGTTGGCCAGGATGAAGCCGTTTCAGCAGTTGCACGGG CAATTCGGCGTGCTCGTTCCGGGTTGAAGGATCCGACCAGACCGATTGGCTCCTTCATGTTCTTGGGACCAACCGGCGTC GGGAAAACCGAATTAGCTAAAGCGTTGGCAGAAGCGATGTTTGGTTCCGAGGACGCCATGATTCGGGTCGATATGTCCGA GTATATGGAGAAATTCAGTACGAGCCGGTTAATCGGTGCAGCACCAGGCTATGTCGGTTATGACGAAGGCGGTCAGTTGA CGGAAAAGGTTCGCAACAAGCCATATTCGGTCGTTTTACTCGATGAAGTCGAAAAGGCGCATCCTGATGTCTTCAACATT TTGTTACAAGTCTTGGACGATGGCTATTTAACTGATGCTAAGGGTCGGCGGGTCGATTTTCGGAATACCATTTTGATTAT GACCAGCAATATCGGAGCAACTGCCATTCGCGATGATAAGACAGTTGGATTTGGTGCAAAAGATCCAACCGCTGACTTCA ATGCCATGAAGAGTCGGATGTTGGCTGAACTGAAAAAGAGCTTCCGTCCAGAATTCCTTAATCGAATTGACGAAACCGTT GTCTTCCATAGCTTGAACAAGGCTGAGTTGCATGAGATCGTCAAGATTATGACCAAAACCGTGCTTAGTCGTATCAAAGA TCAAGGAATTGACGTTAAAATTACGCCAGCCGGGATTGATGCGATTGCCGCGGCTGGATTTGATCCTGAATATGGTGCGC GCCCGATCCGCCGTGCCTTGCAAACGGATGTTGAAGACCAACTCAGTGAGCTATTGTTGACGGGTCAGGCTAAAACCGGC GACTTGATTCAAATCGGCGCTAAAAAAGGCAAGCTGACGTTTACAGTCAAGGAAAACAAAGATAAGCATAAAGAAAATGG CGCTTCTAAAGAACCTGTCAAGGCATGA Protein sequence : MDNLFTPSAKNVLLLAQEQAKYFHHHAVGTEHLLMALVMEKDGIAGKTLRQLGVTENDVHDEIERFTGYGTVDAASQASD SYLPYSPKGKEILAFAGDEAKRLGALKIGTEHILLGLLREDDILAARILQNLGLSLSKTRQMVFKKMGIADTAAKRRPMA RGGARQDGQGTPTLDGLARDLTQMARENRMDPVVGRDKEVRRLIQILARRTKNNPVLIGEPGVGKTAIAEGFAEKIVAGK VPDDMLNKRLMMLDMGSLVAGTKYRGEFEDRLKKIIDEIYKDGNVILFIDELHTLIGAGGAEGAIDASNILKPALARGEL QLIGATTLDEYQKYIEKDAALERRFATIQVDEPTEEEAEQILKGLRPRYEAHHGVTITDEALHEAVVLSSRYITTRFLPD KAIDLVDESAAKVRLDKANVETKADKLQDELAKLVADKEDAIDHQDFETAATIRTKEAGVKAKLADTPEPVNESGVRTDI KVTGADVAEVVSQWTGVPVTQLQKKESERLVNLEKILHQRVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGV GKTELAKALAEAMFGSEDAMIRVDMSEYMEKFSTSRLIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDEVEKAHPDVFNI LLQVLDDGYLTDAKGRRVDFRNTILIMTSNIGATAIRDDKTVGFGAKDPTADFNAMKSRMLAELKKSFRPEFLNRIDETV VFHSLNKAELHEIVKIMTKTVLSRIKDQGIDVKITPAGIDAIAAAGFDPEYGARPIRRALQTDVEDQLSELLLTGQAKTG DLIQIGAKKGKLTFTVKENKDKHKENGASKEPVKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003172245.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 61 |
| clpC | YP_003172245.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 1e-142 | 48 |
