Gene Information

Name : CAP2UW1_0972 (CAP2UW1_0972)
Accession : YP_003166238.1
Strain : Candidatus Accumulibacter phosphatis UW-1
Genome accession: NC_013194
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1116299 - 1116961 bp
Length : 663 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bte:BTH_I0673 DNA-binding response regulator

DNA sequence : 
GTGCGGATTTTGCTGGTTGAAGACGATTCCTTGCTCGGGGACGGCATCCGTGCTGGTCTGAAGCTGGCAGACTACGCGGT
CGACTGGGTGCGCGACGGCGAGGCGGCGCGCCTGGCTTTGCTCGACCACGCCTATCAGGCTTGCGTTCTCGATCTCGGCC
TGCCCAAGCGCGACGGCCTGTCGGTCCTCAAGGACTTGCGCGCGCGCGGCAATCACCTGCCGGTGCTCATCCTCACGGCA
CGCGACAGCAGCGCCGACAAGATCGCTGGGCTCGACGCCGGCGCCGACGATTACCTCACCAAGCCTTTCGATCTGCCCGA
ACTGCAGGCGCGCTTGCGGGCGCTGATTCGCCGCGCCGGCGGCGCCGCGACACCGACGCTCGAGCACGCCGGCGTCGTTC
TCGAACCGGCAAGCAAGCGGGTGCTGCGGGATGGCCAGCCGATCGCCCTGTCGGCGCGCGAGTACGCCCTGCTGCATGAT
CTGCTGAGCCACAAGACGCACATCCGGACGCGCAGCCAACTCGAGGAGAGTCTCTACGCCTGGGGCGAGGAAACCGGCAG
CAATACCGTCGAAGTGTACGTCCACCACCTGCGCAAGAAACTCGGGACCGACTTCATCCGCACCGTTCGCGGTCTCGGTT
ACCAGTTGGGTGACGCCGGCTGA

Protein sequence : 
MRILLVEDDSLLGDGIRAGLKLADYAVDWVRDGEAARLALLDHAYQACVLDLGLPKRDGLSVLKDLRARGNHLPVLILTA
RDSSADKIAGLDAGADDYLTKPFDLPELQARLRALIRRAGGAATPTLEHAGVVLEPASKRVLRDGQPIALSAREYALLHD
LLSHKTHIRTRSQLEESLYAWGEETGSNTVEVYVHHLRKKLGTDFIRTVRGLGYQLGDAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-34 50
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAP2UW1_0972 YP_003166238.1 winged helix family two component transcriptional regulator Y16952.3.orf35.gene. Protein 4e-28 44
CAP2UW1_0972 YP_003166238.1 winged helix family two component transcriptional regulator BAC0487 Protein 1e-31 43
CAP2UW1_0972 YP_003166238.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 8e-30 42
CAP2UW1_0972 YP_003166238.1 winged helix family two component transcriptional regulator U82965.2.orf14.gene. Protein 3e-26 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAP2UW1_0972 YP_003166238.1 winged helix family two component transcriptional regulator VFG0473 Protein 1e-34 46
CAP2UW1_0972 YP_003166238.1 winged helix family two component transcriptional regulator VFG0596 Protein 5e-27 42
CAP2UW1_0972 YP_003166238.1 winged helix family two component transcriptional regulator VFG1389 Protein 3e-24 42